Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00376
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   119   2e-28
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   119   2e-28
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   116   1e-27
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.31 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   1.2  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   2.2  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    25   3.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   5.0  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    24   8.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    24   8.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    24   8.8  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  119 bits (286), Expect = 2e-28
 Identities = 57/106 (53%), Positives = 73/106 (68%)
 Frame = +2

Query: 14  VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
           VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C     
Sbjct: 9   VIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPS 68

Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
              F F +      +  +  +PHKT RG+ AL  L+  +G PPPFD
Sbjct: 69  RGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFD 114


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  119 bits (286), Expect = 2e-28
 Identities = 57/106 (53%), Positives = 73/106 (68%)
 Frame = +2

Query: 14  VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
           VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C     
Sbjct: 9   VIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPS 68

Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
              F F +      +  +  +PHKT RG+ AL  L+  +G PPPFD
Sbjct: 69  RGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFD 114


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  116 bits (279), Expect = 1e-27
 Identities = 54/106 (50%), Positives = 72/106 (67%)
 Frame = +2

Query: 14  VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
           +ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C     
Sbjct: 9   IIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPS 68

Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
              F F +      +  +  +PHKT RG  AL+ L+  +G PPPFD
Sbjct: 69  RGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFD 114


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 32  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 136
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 318 GHPSYVRSLLRAFLPRSVLCGTYLLQSS 235
           G+ SY+ + L+AFLP++V C  YL  SS
Sbjct: 381 GNESYLSNFLKAFLPKTV-C-DYLFPSS 406


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 180 LHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRRTLAMTA 52
           ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 316 VYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 80  GNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSCSWTFPF*SSI*DSMEDCKRYVP 259
           G+ VVV  C +I ISG    N  K  S   +  +++   WT    ++     +  +R V 
Sbjct: 52  GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLK--EWTMEEMAAKRGHKDLLRRAVG 108

Query: 260 HKTERGK---NALRRLRTYDGCPPPF 328
               R K     ++RL  YDG   P+
Sbjct: 109 GMLPRNKLWDRRMKRLYIYDGAEHPY 134


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 257 GHTSYSLP*NLRWSSKMERSTSRIARCTSY 168
           GH  YSLP NL    +++   + IA   SY
Sbjct: 306 GHDEYSLPWNLTEIKRIDIQQADIAALMSY 335


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 249 GMSHTKQSVARMLLGGYVHMMGALL 323
           G++   QS+A+ L GGY  + GAL+
Sbjct: 275 GVTPDIQSIAKCLGGGYQPISGALV 299


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 219 PSKILWKTVRGMSHTKQSVARMLLGG 296
           PSK LW  + G   T      +LLGG
Sbjct: 867 PSKSLWNWLLGEQSTSAEELDILLGG 892


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 32   HL-LGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSCSWTFP 208
            HL L RLA +  ++  +  K + +  ++ N      +  ++  S +RK+C + +  WT  
Sbjct: 1026 HLTLARLAQM-TRLNEDSKKSIPLLYDRFNHDLKLIKQSVQA-SLIRKQCELDTAKWTLE 1083

Query: 209  F*SSI*DSMEDCK 247
               S  ++ E C+
Sbjct: 1084 EYESKLNAKEGCQ 1096


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,703
Number of Sequences: 5004
Number of extensions: 29891
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)