Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00376
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 108 1e-24
07_01_0071 - 522920-523063,524125-524212,524289-524677 103 6e-23
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 44 3e-05
11_04_0056 + 12942802-12942920,12943022-12943115 33 0.072
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 2.7
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 27 3.6
04_03_0148 + 11869929-11869968,11870000-11870421 27 3.6
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 27 6.2
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 26 8.2
07_03_0786 + 21510477-21511451,21512272-21512499 26 8.2
06_01_0810 + 6111962-6112507 26 8.2
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 26 8.2
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 108 bits (260), Expect = 1e-24
Identities = 52/106 (49%), Positives = 69/106 (65%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N +
Sbjct: 13 VVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F S + +PHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 73 HGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYD 118
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 103 bits (246), Expect = 6e-23
Identities = 49/106 (46%), Positives = 67/106 (63%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRKR N +
Sbjct: 13 VVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F + + +PHKT RG+ AL L+ +DG PPP+D
Sbjct: 73 HGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYD 118
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +3
Query: 189 PARGPFHFRAPSKILWKTVRGM 254
P+ GP HFR+P+KILW+TVRGM
Sbjct: 5 PSHGPIHFRSPAKILWRTVRGM 26
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 254 VPHKTERGKNALRRLRTYDGCPPPFD 331
+PHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 27 IPHKTKRGEAALARLKAYEVVTPPYD 52
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 33.1 bits (72), Expect = 0.072
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 272 RGKNALRRLRTYDGCPPPFD 331
RG+ AL RL+ Y+G PPP+D
Sbjct: 9 RGEAALARLKAYEGVPPPYD 28
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 50 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 160
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 192 QDCTLHLLRRNDISLSLFLKKLPEMLICS 106
+DC L LLR +D SL LPE+ ICS
Sbjct: 669 RDCDLRLLRSDDYVASL-PAVLPELWICS 696
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 18 SMAVVICWAVWRQSSPRSF 74
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 57 SSPRSFSKGTKLLWFAANKSTSLATSLGTNSSLCHSC-VRGATCNPARGPFHFRAPSKIL 233
S+ + S + L +A +++ A++ ++LC GA C PA+GP P
Sbjct: 22 SAAAAASAASARLHASAQPASAAASASAAAAALCPPFPAAGAACPPAQGPIFGGGPGAKP 81
Query: 234 W 236
W
Sbjct: 82 W 82
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 53 AVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSCSW 199
++ K++ E K +V +N+SGN + L + L K+ Q C W
Sbjct: 672 SIYNKLMKEAQKALVQGTHGLNLSGNILQQGAILANELIKK-EDQKCRW 719
>07_03_0786 + 21510477-21511451,21512272-21512499
Length = 400
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 192 QDCTLHLLRRNDISLSLFLKKLPEMLICS 106
+DC L LLR +D SL LPE ICS
Sbjct: 353 RDCDLRLLRSDDCVASL-PAVLPESWICS 380
>06_01_0810 + 6111962-6112507
Length = 181
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 102 AANKSTSLATSLGTNSSLCHSCVRGA 179
AA+ S S A+S G++SSLC S G+
Sbjct: 46 AASPSPSSASSSGSSSSLCSSTGEGS 71
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 26 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQ 112
+GHLL R + + LEG KV + CEQ
Sbjct: 86 KGHLLDRHGLYMCDLCLEGRKVFI--CEQ 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,736
Number of Sequences: 37544
Number of extensions: 222017
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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