Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00376
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.30
SB_59139| Best HMM Match : AT_hook (HMM E-Value=8.7) 28 2.8
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 28 2.8
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 27 3.7
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 27 6.4
SB_33117| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9) 26 8.5
SB_33215| Best HMM Match : HECT (HMM E-Value=0) 26 8.5
SB_28210| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 42.3 bits (95), Expect = 1e-04
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +2
Query: 254 VPHKTERGKNALRRLRTYDGCPPPFD 331
+PHKT++G A+ R++ +DG PPP+D
Sbjct: 2 IPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 18 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 140
SM+V +C ++W + P F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_59139| Best HMM Match : AT_hook (HMM E-Value=8.7)
Length = 111
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 189 PARGPFHFRAPSKILWKTVRGMSHT---KQSVARMLLGGYV 302
PA P R +ILW +VRG SH+ + S +L YV
Sbjct: 23 PAADPVCDRLHCRILWSSVRGPSHSLKARSSKVPKILARYV 63
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 2.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 148
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 211 KWKGPRAGLHVAPLTQE*HKLEFVPKEVARDVDLFAANHNNFVPFEKDLGDDCR 50
KW+ P+ H A L Q+ +P++ ++D ++NH+N V + DC+
Sbjct: 282 KWEAPQLWCHPAVLVQDKVVAFSIPRQQSQD----SSNHDNLVAHVQTYILDCK 331
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -2
Query: 344 HVDGYQREEGTHHMYVAS*-EHS-CHALFCVGHTSYSLP*NL---RWSSKMERSTSRIAR 180
HV G H ++V H+ CH L G+TS++ L R+ S R T + R
Sbjct: 104 HVTGNTSHATCHTLHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATRHTLHVTR 163
Query: 179 CTSYA 165
TS+A
Sbjct: 164 YTSHA 168
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 120 SLATSLGTNSSLCHSCVRGATCNPA-RGPFHFRAPSKILWKTVRGM 254
S TS + S +C SC G +CNP + + W TV G+
Sbjct: 265 SFITSCWSYSVICMSCAVGPSCNPVEKSCENGEGRCVTAWGTVNGV 310
>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 371 RHVEQQALQHVDGYQREEGTHHMYVAS*EHSCHALFCVGHTSYSLP*NLRWSSKME--RS 198
R+ ++ALQ+V+ + T H+ A+ E C C+G+ N SS++E R
Sbjct: 34 RNELKRALQNVERFGSFRLTRHVKTAACESPCLVDSCLGYKDRLYNENPNSSSQIEYYRQ 93
Query: 197 TSRIARC 177
+ +A+C
Sbjct: 94 NTFLAKC 100
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 328 KGRRAPIICT*PP-KSILATLCFVWDIP 248
+GR+AP +C+ PP L+++C DIP
Sbjct: 205 RGRKAPRLCSPPPVLRYLSSICIGSDIP 232
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 26.6 bits (56), Expect = 6.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 147 SSLCHSCVRGATCNPARG 200
S C +C GATC+P G
Sbjct: 99 SKKCSNCQHGATCDPVNG 116
>SB_33117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 201 VHEQDCTLHL-LRRNDISLSLFLKKLPEMLICSQRT 97
++E +C +R+ DI + + +LP + CSQRT
Sbjct: 92 MNEDECIAEFRMRKQDIPIVVDALQLPATIQCSQRT 127
>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 113 FVRSEPQQLCSLREGPWR*LPPDGPADDHGHR 18
+V +L S ++ P R PP GP DD G +
Sbjct: 569 YVEKYGPELESAKQTPKRKPPPTGPQDDKGQK 600
>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 201 VHEQDCTLHL-LRRNDISLSLFLKKLPEMLICSQRT 97
++E +C +R+ DI + + +LP + CSQRT
Sbjct: 144 MNEDECIAEFRMRKQDIPIVVDALQLPATIQCSQRT 179
>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
Length = 356
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 201 VHEQDCTLHL-LRRNDISLSLFLKKLPEMLICSQRT 97
++E +C +R+ DI + + +LP + CSQRT
Sbjct: 164 MNEDECIAEFRMRKQDIPIVVDALQLPATIQCSQRT 199
>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
Length = 1128
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 135 KKLPEMLICSQRTTTTLFPSRRTL 64
K LP C QR + L+PS+R L
Sbjct: 1089 KALPMATTCGQRMSIPLYPSKRIL 1112
>SB_28210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 201 VHEQDCTLHL-LRRNDISLSLFLKKLPEMLICSQRT 97
++E +C +R+ DI + + +LP + CSQRT
Sbjct: 47 MNEDECIAEFRMRKQDIPIVVDALQLPATIQCSQRT 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,815
Number of Sequences: 59808
Number of extensions: 257130
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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