Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00376
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   116   4e-27
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   116   4e-27
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   4.3  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    27   5.7  
L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81107-7|CAD31662.1|  119|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical ...    26   7.5  
AF000263-16|AAG00014.1|  119|Caenorhabditis elegans Hypothetical...    26   7.5  
U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  116 bits (280), Expect = 4e-27
 Identities = 56/109 (51%), Positives = 74/109 (67%)
 Frame = +2

Query: 2   NSARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 181
           N A +IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN
Sbjct: 5   NRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCN 64

Query: 182 VQSCSWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPF 328
           +      F + +         +  +PHKT RG  AL+ LR Y+G P  +
Sbjct: 65  INPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKY 113


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  116 bits (280), Expect = 4e-27
 Identities = 56/109 (51%), Positives = 74/109 (67%)
 Frame = +2

Query: 2   NSARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 181
           N A +IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN
Sbjct: 5   NRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCN 64

Query: 182 VQSCSWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPF 328
           +      F + +         +  +PHKT RG  AL+ LR Y+G P  +
Sbjct: 65  INPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKY 113


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 262 VWDIPLTVFHRILDGALKWKGPRAGLHVAPLTQE*HKLEFVPKEVARDV 116
           VW   +T++     G + WKG R+G  +  L     +L   PK    D+
Sbjct: 304 VWAYGVTIWEMFSYGEMPWKG-RSGAQILELVDRKKELLTRPKACPEDI 351


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 262 VWDIPLTVFHRILDGALKWKGPRAGLHVAPLTQE*HKLEFVPKEVARDV 116
           VW   +T++     G + WKG R+G  +  L     +L   PK    D+
Sbjct: 304 VWAYGVTIWEMFSYGEMPWKG-RSGAQILELVDRKKELLTRPKACPEDI 351


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 230 SMEDCKRYVPHKTERGK-NALRRLRTYDGCPPP 325
           +M +  R+ P  T     N LR+ R  DGCP P
Sbjct: 402 AMAEFTRHTPTGTRSATPNILRKNRNTDGCPSP 434


>L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical
           protein C29E4.10 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 39  WAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLGTNSSLC-HSCVRGATCNPARGPFHFR 215
           W + R+SS R    GT + +     ST    ++    SLC +S  R     P        
Sbjct: 252 WKILRESSGRFDGGGTYVTYTNGKDSTIFVETMSYKKSLCEYSSPRPYHVKPRLNMSLNF 311

Query: 216 APSKILWKTV 245
            PSK   K+V
Sbjct: 312 GPSKFFSKSV 321


>Z81107-7|CAD31662.1|  119|Caenorhabditis elegans Hypothetical
           protein R07H5.11 protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 74  LEGNKVVVV---RCEQINISGNFFRNKLKLMSFLRKRCNVQSCSWTF 205
           L+ ++++V+   R E I + G FF+N+ K  S   K CN +  S  F
Sbjct: 64  LQPHRIMVLSRNRYESIGLRGKFFKNQKKCYS---KNCNHKKISEAF 107


>Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical
           protein F46G10.3 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 245 KRYVPHKTERGKNALRRLRTYDG 313
           ++YVPH TE  +N+L++ ++  G
Sbjct: 3   RKYVPHTTELCENSLKKFKSLVG 25


>AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical
           protein F59A7.8 protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  ICWAVWRQSSPRS 71
           +CW +WR+S P S
Sbjct: 152 LCWLLWRESQPHS 164


>AF000263-16|AAG00014.1|  119|Caenorhabditis elegans Hypothetical
           protein T08B2.4 protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 74  LEGNKVVVV---RCEQINISGNFFRNKLKLMSFLRKRCNVQSCSWTF 205
           L+ ++++V+   R E I + G FF+N+ K  S   K CN +  S  F
Sbjct: 64  LQPHRIMVLSRNRYESIGLRGKFFKNQKKCYS---KNCNHKKISEAF 107


>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 92  VVVRCEQINISGNFFRNKLKLMSFLRKR 175
           ++V C  I +S   F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221


>U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical
           protein D1073.1a protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 92  VVVRCEQINISGNFFRNKLKLMSFLRKR 175
           ++V C  I +S   F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221


>U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical
           protein C39D10.3b protein.
          Length = 213

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 DLFAANHNNFVPFEKDLGD 59
           DLF A H +F+   KDLGD
Sbjct: 69  DLFHAGHLSFLEAAKDLGD 87


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 DLFAANHNNFVPFEKDLGD 59
           DLF A H +F+   KDLGD
Sbjct: 186 DLFHAGHLSFLEAAKDLGD 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,841,540
Number of Sequences: 27780
Number of extensions: 178884
Number of successful extensions: 510
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)