Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00376
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 104 2e-23
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 103 3e-23
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 103 4e-23
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 103 4e-23
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 29 0.99
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 28 2.3
At2g40620.1 68415.m05010 bZIP transcription factor family protei... 28 2.3
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 27 4.0
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 27 4.0
At1g50960.1 68414.m05729 gibberellin 20-oxidase-related similar ... 27 4.0
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 26 7.0
At3g44840.1 68416.m04831 S-adenosyl-L-methionine:carboxyl methyl... 26 7.0
At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l... 26 7.0
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 26 7.0
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi... 26 9.2
At5g16280.1 68418.m01901 expressed protein 26 9.2
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 26 9.2
At1g28520.1 68414.m03506 expressed protein 26 9.2
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 104 bits (250), Expect = 2e-23
Identities = 50/106 (47%), Positives = 67/106 (63%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M FLRKR N +
Sbjct: 13 VVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F + + +PHKT+RG NAL RL+ ++G P P+D
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYD 118
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 103 bits (248), Expect = 3e-23
Identities = 51/106 (48%), Positives = 67/106 (63%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M FLRKR N +
Sbjct: 13 VVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F + + +PHKT+RG AL RL+ ++G PPP+D
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYD 118
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 103 bits (247), Expect = 4e-23
Identities = 50/106 (47%), Positives = 66/106 (62%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M FLRKR N +
Sbjct: 13 VVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F + + +PHKT+RG AL RL+ Y+G P P+D
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYD 118
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 103 bits (247), Expect = 4e-23
Identities = 50/106 (47%), Positives = 66/106 (62%)
Frame = +2
Query: 14 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVQSC 193
V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M FLRKR N +
Sbjct: 13 VVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPS 72
Query: 194 SWTFPF*SSI*DSMEDCKRYVPHKTERGKNALRRLRTYDGCPPPFD 331
F + + +PHKT+RG AL RL+ ++G PPP+D
Sbjct: 73 HGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYD 118
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.1 bits (62), Expect = 0.99
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 2 NSARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 148
NS R IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 291 NSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +3
Query: 123 LATSLGT--NSSLCHSCVRGATCNPARGPFHFRAPSKILWKTVRGMSHTKQS 272
L T GT LC C C+P H+R K + +R +S T S
Sbjct: 187 LCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDS 238
>At2g40620.1 68415.m05010 bZIP transcription factor family protein
identical to b-Zip DNA binding protein GI:2246376 from
[Arabidopsis thaliana]; contains a bZIP transcription
factor basic domain signature (PDOC00036)
Length = 367
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 141 TNSSLCHSCVRGATCNPARGPFHFRAPSKILWK 239
+N S C T P RGP+H RA S++ ++
Sbjct: 12 SNLSQCPPLATAPTPAPVRGPYHRRAHSEVQFR 44
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 2 NSARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 148
NS R IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 366 NSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 2 NSARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 148
NS R IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 366 NSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At1g50960.1 68414.m05729 gibberellin 20-oxidase-related similar to
gibberellin 20-oxidase from Pisum sativum [GI:1848146],
Phaseolus vulgaris [GI:2262201]; contains Pfam domain
PF03171, 2OG-Fe(II) oxygenase superfamily
Length = 336
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 8 ARVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKL-MSFLR 169
+R+ D R +L + + ++ + + +Q+N+S +F N +L SFLR
Sbjct: 143 SRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLR 197
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 180 LHLLRRNDISLSLFLKKLPEM 118
LH LR+ D+S S+ LK+LP++
Sbjct: 675 LHNLRQMDLSYSVNLKELPDL 695
>At3g44840.1 68416.m04831 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 348
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 265 FVWDIPLTVFHRILDGALKWKGPRAGLHVAPLTQE*HKLEFVPKEVARDVDLFAAN 98
F +P + F R+L PR+ LHV + H L +PK++ +D D A N
Sbjct: 116 FATGVPASFFGRVL--------PRSSLHVGVSSYSLHFLSKIPKKI-KDCDSHAWN 162
>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
protein [Arabidopsis thaliana] GI:12006422; contains
Pfam profiles: PF02197 Regulatory subunit of type II PKA
R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
PF03730: Ku70/Ku80 C-terminal arm
Length = 680
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 53 AVIAKVLLEGNKVVVVRCEQINISGN 130
+ IA+ + E NKV +VRC N GN
Sbjct: 352 SAIAREMKETNKVAIVRCVWRNGQGN 377
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 210 NGKVHEQDCTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFP 79
N HE + + L NDI L F ++ +I ++ T T P
Sbjct: 251 NVSTHEVEDIVSQLSENDIELDTFSSQIDRFMIPTESTQTANVP 294
>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 574
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 111 KSTSLATSLGTNSSLCHSCVRGATCNPARGPFHFRAPSKILWKTV-RGMSHTKQSVARML 287
+ST + T+ G C SCV G++C R+ +K++ + RG H Q+V + L
Sbjct: 19 RSTPIKTT-GGQYRFCKSCVEGSSCRTV------RSRTKLMNVLIERGRPHEAQTVFKTL 71
>At5g16280.1 68418.m01901 expressed protein
Length = 1265
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 59 IAKVLLEG-NKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 181
+ K+LLE + VV+V C + + F RN L + L+ CN
Sbjct: 9 LGKMLLEEISPVVMVLCTPL-VEDTFLRNGLSFVETLKPFCN 49
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 321 GGHPSYVRS-LLRAFLPRSVLCGTYLLQ 241
G + SY R LL FLP S+ C +LLQ
Sbjct: 577 GSNSSYSRKFLLITFLPLSLACLAFLLQ 604
>At1g28520.1 68414.m03506 expressed protein
Length = 486
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 313 PIICT*PPKSILATLCFVWDIP 248
P IC PP + L C +WD P
Sbjct: 203 PTICP-PPSAFLGPKCALWDCP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,440,761
Number of Sequences: 28952
Number of extensions: 169171
Number of successful extensions: 490
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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