Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00375
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 30 0.40
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 28 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.6
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 3.8
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 27 3.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.8
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.0
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 5.0
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 26 5.0
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 26 6.6
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 26 6.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.7
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 23 NAPYGLALKDEEVDYENKLENLGAIGNYSSNFD 121
N P + K +E+D + LEN+ GNY S+F+
Sbjct: 29 NIPEPINGKVQEIDTKESLENVDRYGNYRSDFN 61
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 228 GFCRSVKQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLA-FAN 404
GF ++ S S T S + + S++P A + + + +KA +L N
Sbjct: 524 GFIQNATISTPS-TSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDHVKKAEHLEPLLN 582
Query: 405 QEQS-PSYNFAKERPDLLMQLNPALLQHNEGQ 497
S PS NF PD L N + LQ ++ Q
Sbjct: 583 VSSSVPSKNFTVSSPDHLKYGNTSSLQVSDSQ 614
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 249 QSVESLTD--SEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPS 422
Q V++L+ + +RE S + S+ NA +I L Q+ ++QYYEK
Sbjct: 1542 QQVQNLSAELAALREHSP-TQGSLENADEIARLRSQLESTKQYYEKEKETEILAARSELV 1600
Query: 423 YNFAKERPDLLMQLN 467
K + +L QLN
Sbjct: 1601 AEKEKTKEELENQLN 1615
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 486 NEGQMQ-QLKFMFSFNKGNRFCHRASPSLVT 575
NE + + QL FSFN+ N F + ASP+ +T
Sbjct: 171 NENKSESQLGESFSFNQDNTFVNYASPASIT 201
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 528 NKGNRF-CHRASPSLVTHWTLIHRQSITSIARWKQLIRWQQ 647
N G++ + S SLV + T IH S + I R K+++R+++
Sbjct: 317 NNGSKIRVQQLSLSLVEYITFIHPSSSSPIVRKKKVLRYEE 357
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +3
Query: 237 RSVKQSVESLTDSEVRESSSISPD--SVHNAVDIEALAEQVHLSRQYYEK--ANYLAFAN 404
+S KQ++E+ T+++ S +PD V + D++A + V S++ + AN N
Sbjct: 228 KSTKQNIEATTENDALSESISTPDIQKVAQSEDVDAEQDTVADSKEEERRDIANDDLIVN 287
Query: 405 -QEQSPSYNFAKERPDLLMQLNPALLQHNE 491
+ P ++F+ D L+ + H++
Sbjct: 288 ANAKEPMHHFSFTDLDTLLNWPKYVFHHHK 317
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 44 LKDEEVDYENKLENLGAIGNYSSNFDDPMVVEELLTIINLTQH*PSLGQMKAS*EICRI 220
LK+ E D K+E L I S +F D + E++L I +T H S + AS E I
Sbjct: 755 LKEVE-DTNVKVECLHVISRMSLSFSDDEMAEKILKAIYVTYHMDSPDILFASAEAMSI 812
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 594 RQSITSIARWKQLIRWQQSYGEYTHQSCSCFRDCQQSFLSN 716
++ +T + KQL + Y T +CF DC Q F S+
Sbjct: 9 QEHLTQVLEAKQLKEYLNMYSTLTQ---NCFSDCVQDFTSS 46
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 187 SNEGILGNLSDSTEDFADLLNNP*NP*QIQKYENRH 294
++E L N+S +TED + L+N P +KYE H
Sbjct: 79 TDEEYLQNVSTTTEDVSMLINTP----VTEKYEQEH 110
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 423 YNFAKERPDLLMQLNPALLQ-HNEGQMQQLKFMFSFNKGNRFCHRASPSLVTHWT 584
+ A+E +LL+ L Q HN+ ++ KF S ++ + A +L+TH+T
Sbjct: 464 FEVAREVKNLLLLLEGLKAQRHNKPKLFFRKFNLSLFDKQKYANYAISALLTHFT 518
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 5 TSSLMQNAPYGLALKDEEVDYENKLENLGAIGNYSSNFDD 124
T L+ P+GL ++ + + +++L+NLG+ N + DD
Sbjct: 243 TGFLVLVIPFGLGVRSRKKEKQDELDNLGSF-NLDNKRDD 281
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 240 SVKQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYY-EKANYLAFANQEQS 416
+V + T S S++ + +S AV L+ LS Y+ KAN LA ANQ QS
Sbjct: 179 AVPHYAHATTGSATDASNTSNGNSNPAAVPAGFLSGYSPLSYAYFVAKANELALANQRQS 238
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 234 CRSVKQSVESL--TDSEVRESSSISPDSVHNAVDIE--ALAEQVH 356
C + +V S T RESS+ISP+S + A ++ + EQVH
Sbjct: 263 CSASSTTVNSAVSTKKRRRESSTISPESAYVAAQLQNPSEREQVH 307
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 351 VHLSRQYYEKANYLAFANQEQSPSYNFAKERPDLLMQL 464
+ L Y EK+ +E SYN ++RP ++MQL
Sbjct: 316 ITLDHDYIEKSTEKDKVLEENVESYNPTEQRPLVVMQL 353
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 624 KQLIRWQQSYGEYTHQSCSCFRDCQQSFLSNSSMVD 731
K +R+QQ Y ++TH+ QSF SN++ V+
Sbjct: 182 KPFLRFQQKYQQFTHR---WLEFAPQSFSSNTNSVN 214
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 17 MQNAPYGLALKDEEVDYENKLENLGAIGNYSSNFDDPMVVEELLTIINL 163
++N L ++ +++ E +ENL I N FD P + + L+++ L
Sbjct: 217 IKNDKEALGIQAQQL-LEEPVENLHLIRNIFEKFDSPYITIKKLSLLTL 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,379
Number of Sequences: 5004
Number of extensions: 58784
Number of successful extensions: 184
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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