Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00375
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118...    28   6.9  

>03_05_0200 -
           21911260-21911322,21911655-21911705,21911756-21911851,
           21911947-21912045,21913213-21913526,21913621-21913696,
           21913788-21915136,21915344-21915944
          Length = 882

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +3

Query: 477 LQHNEGQMQQLKFMFSFNKGNRFCHRASPSLVTHWTLIHRQSITSIARWKQLIRWQQSY 653
           + H+E   ++ K  F+   G + CHR +  L+   T I   + T+   +K+ ++W+ ++
Sbjct: 821 VSHSEVPRKRKKITFADETGGKLCHRVTSFLLVAITDIDDNNGTN-PSFKENLQWRYNF 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,814,192
Number of Sequences: 37544
Number of extensions: 373225
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)