Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00375
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7) 32 0.43
SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2) 32 0.43
SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7) 32 0.43
SB_27743| Best HMM Match : Nuclease_act (HMM E-Value=4.4) 31 0.75
SB_46318| Best HMM Match : DUF947 (HMM E-Value=1.9) 30 2.3
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2) 28 7.0
>SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)
Length = 215
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/93 (26%), Positives = 45/93 (48%)
Frame = +3
Query: 246 KQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPSY 425
K+++E L D++ RE S+ ++ +E L E+ R E+ L +E+ S
Sbjct: 112 KRAMEKLGDTKKREESASKKSRRSGSMMVEYLKEKNEKDRAIKERELEL-HERKEREDS- 169
Query: 426 NFAKERPDLLMQLNPALLQHNEGQMQQLKFMFS 524
+R D ++QL Q + Q QQ++ MF+
Sbjct: 170 ----QRHDTILQLIQQQQQQQQQQQQQMQLMFA 198
>SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)
Length = 148
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/93 (26%), Positives = 45/93 (48%)
Frame = +3
Query: 246 KQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPSY 425
K+++E L D++ RE S+ ++ +E L E+ R E+ L +E+ S
Sbjct: 45 KRAMEKLGDTKKREESASKKSRRSGSMMVEYLKEKNEKDRAIKERELEL-HERKEREDS- 102
Query: 426 NFAKERPDLLMQLNPALLQHNEGQMQQLKFMFS 524
+R D ++QL Q + Q QQ++ MF+
Sbjct: 103 ----QRHDTILQLIQQQQQQQQQQQQQMQLMFA 131
>SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)
Length = 123
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/93 (26%), Positives = 45/93 (48%)
Frame = +3
Query: 246 KQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPSY 425
K+++E L D++ RE S+ ++ +E L E+ R E+ L +E+ S
Sbjct: 20 KRAMEKLGDTKKREESASKKSRRSGSMMVEYLKEKNEKDRAIKERELEL-HERKEREDS- 77
Query: 426 NFAKERPDLLMQLNPALLQHNEGQMQQLKFMFS 524
+R D ++QL Q + Q QQ++ MF+
Sbjct: 78 ----QRHDTILQLIQQQQQQQQQQQQQMQLMFA 106
>SB_27743| Best HMM Match : Nuclease_act (HMM E-Value=4.4)
Length = 265
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 267 TDSEVRESSSISPDSVHNAVDIE-ALAEQVHLSRQYYEKANYLAFANQEQSPSYNFAKER 443
T S V++++ +P S+ + A+ E+ H + Y + + + +E +P Y F++E
Sbjct: 86 TVSPVKQANPTNPASIPRQIPTSFAMQEKGHQRQAYSQHQSPNKYQTREATPQYMFSEET 145
Query: 444 PDLLMQLNPALLQHNE 491
+ + L HNE
Sbjct: 146 NPITPHPSEMALFHNE 161
>SB_46318| Best HMM Match : DUF947 (HMM E-Value=1.9)
Length = 215
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/93 (25%), Positives = 44/93 (47%)
Frame = +3
Query: 246 KQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPSY 425
K+++E L D++ RE + ++ +E L E+ R E+ L +E+ S
Sbjct: 112 KRAMEKLGDTKKREEFASKKSRRSGSMMVEYLKEKNEKDRAIKERELEL-HERKEREDS- 169
Query: 426 NFAKERPDLLMQLNPALLQHNEGQMQQLKFMFS 524
+R D ++QL Q + Q QQ++ MF+
Sbjct: 170 ----QRHDTILQLIQQQQQQQQQQQQQMQLMFA 198
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 288 SSSISPDSVHNAVDIEA-LAEQVHLSRQYYEKANYLAFANQEQSPSYN 428
S ++S D H V + A + E++ +QYY+KA L+ P+ N
Sbjct: 2907 SLNVSSDGTHVGVTVYAKIGERIIDLKQYYDKATLLSAIKNIAQPNLN 2954
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 234 CRSVKQSVESLTDSEVRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQ 413
C + + +++L D+E + +S H A + LA QV L + EKA ++ A+ +
Sbjct: 266 CENAQNLLDALWDNE----APVSHPVFHQAC--QKLAYQVQLVQWCLEKAQSISLAHLPE 319
Query: 414 SPSYNFAKERP 446
++ K+RP
Sbjct: 320 KEVFSLLKKRP 330
>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
Length = 208
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 270 DSEVRESSSISPDSVHNAVDIEALAEQVHLSR-QYYEKANYLAFANQEQ-SPSYNFAKER 443
D+ S ++ D N DI +A + +R + +N LA E+ + N R
Sbjct: 129 DNNRPHKSRVANDLADNRSDISQVANDLADNRPDISQVSNNLADNRLEELQVANNLTDNR 188
Query: 444 PDLLMQLNPAL 476
PD+ + +NPAL
Sbjct: 189 PDISLHVNPAL 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,804,166
Number of Sequences: 59808
Number of extensions: 432005
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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