Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00375
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66810.1 68418.m08423 expressed protein similar to unknown pr...    30   1.4  
At1g46408.1 68414.m05212 MADS-box family protein contains simila...    29   4.3  
At5g47940.1 68418.m05922 expressed protein                             27   10.0 
At3g18810.1 68416.m02389 protein kinase family protein contains ...    27   10.0 

>At5g66810.1 68418.m08423 expressed protein similar to unknown
           protein (gb|AAB71479.1|)
          Length = 750

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
 Frame = +3

Query: 201 LRKFVGFH*GFC--RSVKQSVESLTDS---EVRESSSISPDSVHNA-----VDIEALAEQ 350
           LR  +  H GFC  + +  +V  LT     E R++ +   +S++       VDI+ALA  
Sbjct: 246 LRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHA 305

Query: 351 VHLSRQ 368
           V L+RQ
Sbjct: 306 VELTRQ 311


>At1g46408.1 68414.m05212 MADS-box family protein contains
           similarity to MADS-box protein GI:2505875 from
           [Arabidopsis thaliana]
          Length = 266

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 187 SNEGILGNLSDSTEDFADL 243
           +N G+LGNL +  EDF DL
Sbjct: 166 NNNGLLGNLDECNEDFDDL 184



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 187 SNEGILGNLSDSTEDFADL 243
           +N G+LGNL +  EDF DL
Sbjct: 226 NNNGLLGNLDECNEDFDDL 244


>At5g47940.1 68418.m05922 expressed protein
          Length = 749

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 298 MDDDSRTSESVKDST--DCLTDRQNPQWNPTNFLRCLHLTQGRSV 170
           + D++   E+V  ST  DC T+R+N  + PT     +H  +  +V
Sbjct: 586 VSDNALDEETVTSSTKADCYTERENLSYKPTEPDSLIHELESSNV 630


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 595 DRVSHPSPGGNNSLDGNSHMEN 660
           D  S PSP GNN+ DGN+   N
Sbjct: 60  DSQSPPSPQGNNNNDGNNGNNN 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,538
Number of Sequences: 28952
Number of extensions: 302404
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)