Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00374
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 159 3e-39
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 156 2e-38
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 135 3e-32
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 8e-30
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 71 1e-12
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 60 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 7e-04
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.98
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81) 31 1.3
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 2.3
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 4.0
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 9.1
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.1
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 159 bits (385), Expect = 3e-39
Identities = 86/162 (53%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
NP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SS
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISS 121
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXX 615
MVLTKMKETAEAYLG V +AV+TVP + + K ++A +N
Sbjct: 122 MVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATK-DAGTIAGLNVLRIINEPTAAA 180
Query: 616 XXXXXXXXXENEM-YLSLTSAGGTFDVSILTIEDGIFEVKST 738
E L GGTFDVS+LTIEDGIFEVKST
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFEVKST 222
Score = 127 bits (306), Expect = 1e-29
Identities = 59/63 (93%), Positives = 60/63 (95%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 254 RTP 262
P
Sbjct: 61 MNP 63
Score = 103 bits (248), Expect = 1e-22
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 677
PAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLGG
Sbjct: 147 PAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGG 202
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 156 bits (379), Expect = 2e-38
Identities = 88/163 (53%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SS
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISS 121
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXX 615
MVL KMKETAEAYLG+ V +AVITVP + + K ++A +N
Sbjct: 122 MVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATK-DAGTIAGLNVLRVINEPTAAA 180
Query: 616 XXXXXXXXXENEM-YLSLTSAGGTFDVSILTIEDG-IFEVKST 738
E L GGTFDVSILTI+DG +FEVKST
Sbjct: 181 LAYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFEVKST 223
Score = 123 bits (296), Expect = 2e-28
Identities = 56/63 (88%), Positives = 59/63 (93%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 254 RTP 262
P
Sbjct: 61 LNP 63
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 135 bits (327), Expect = 3e-32
Identities = 74/161 (45%), Positives = 98/161 (60%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 435
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXX 615
MVLTKMKETAEAYLGK V +AV+TVP + + K ++A +N
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK-DAGAIAGLTVMRIINEPTAAA 878
Query: 616 XXXXXXXXXENEMYLSLTSAGGTFDVSILTIEDGIFEVKST 738
+ L GGTFDVS+LTI++G+FEV +T
Sbjct: 879 IAYGMDKKEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVAT 919
Score = 98.7 bits (235), Expect = 4e-21
Identities = 45/56 (80%), Positives = 52/56 (92%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 677
PAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLGG
Sbjct: 845 PAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGG 899
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +2
Query: 92 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARTP 262
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 127 bits (307), Expect = 8e-30
Identities = 58/64 (90%), Positives = 60/64 (93%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 254 RTPT 265
PT
Sbjct: 61 MNPT 64
Score = 115 bits (277), Expect = 4e-26
Identities = 64/111 (57%), Positives = 73/111 (65%), Gaps = 25/111 (22%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV-- 429
NP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVN 121
Query: 430 -----------------------SSMVLTKMKETAEAYLGKTVQNAVITVP 513
SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 122 EAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 106 bits (255), Expect = 2e-23
Identities = 52/56 (92%), Positives = 52/56 (92%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 677
PAYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLGG
Sbjct: 240 PAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGG 295
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/105 (40%), Positives = 52/105 (49%)
Frame = +1
Query: 424 EVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXX 603
++SSMVL KMKETAEAYLG V +AV+TVP + + K
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 604 XXXXXXXXXXXXXENEMYLSLTSAGGTFDVSILTIEDGIFEVKST 738
+ L GGTFDVS+L+IEDGIFEVKST
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKST 315
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAG 557
PAYFNDSQRQATKDAG
Sbjct: 172 PAYFNDSQRQATKDAG 187
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 432
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 433 SMVLTKMKETAEAYLGKTVQNAVITVP 513
+M+ T++K TAE L V + VI+VP
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +3
Query: 492 ECSYHGPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 662
+C P+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 663 FDLG 674
D+G
Sbjct: 258 VDIG 261
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 92 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 247
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 70.5 bits (165), Expect = 1e-12
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEVS 432
NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIG 150
Query: 433 SMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQKMQVPSLA*TFSESSMNXXXXX 612
V+ K++ AE L TV AV++VP +K + ++ SLA +N
Sbjct: 151 GYVIKKLRTMAERNLTTTVTKAVMSVP-AEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 613 XXXXXXXXXXENEMYLSLTSAGGTFDVSILTIEDGIF 723
+ + GGT DVS+L I+ G+F
Sbjct: 210 ALAYGLHKKEGVANVMVVDLGGGTLDVSLLNIQGGMF 246
Score = 68.1 bits (159), Expect = 7e-12
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 677
PA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLGG
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGG 231
Score = 61.3 bits (142), Expect = 8e-10
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 80 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 254 RTP 262
P
Sbjct: 90 INP 92
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/74 (55%), Positives = 45/74 (60%), Gaps = 26/74 (35%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIA 617
PA+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIA
Sbjct: 46 PAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIA 105
Query: 618 YGLDKK--GTGERN 653
YGLDK G ERN
Sbjct: 106 YGLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +1
Query: 379 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 513
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLG 674
P +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G
Sbjct: 113 PPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMG 171
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 373 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 513
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 143 GKVEIIANDQGNRTTPSYVAFTDTERLI 226
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 676 GGTFDVSILTIEDGIFEVKST 738
GGTFD+SIL I+ G+FEVK+T
Sbjct: 9 GGTFDISILEIQKGVFEVKAT 29
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 152 EIIANDQGNRTTPSYVAFT-DTERL 223
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 719 IPSSMVRMDTSKVPPAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTC 552
IPSS+V ++ ++P + V + S+L + SSS F +S+ + + TC
Sbjct: 319 IPSSLVTRESDRIPSSFVAFESDGIPSSLVTREFDGLSSSLFACESDGIPSSFVTC 374
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 370 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQK 549
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 550 MQ 555
Q
Sbjct: 714 SQ 715
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 237
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 238 QEPGGENPNNTIFDA 282
G +P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 555 LHLLWLVFESH*STRDRDNCILHSFAKIS 469
++ LWL F + S+ D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 20 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 106
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 467 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 288
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 287 RLASNIVL 264
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = -1
Query: 321 HSSIFELTSDETFGIEYCVVGVLATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFP 142
+S + L + T +EY +GVLATW R + V AT L W L +++T
Sbjct: 23 YSRLGVLATWSTGDLEYWRLGVLATWSTGDLEYSR-LGVLATWSTGDLEYWRLGVLAT-- 79
Query: 141 CWKTPTQEY 115
W T EY
Sbjct: 80 -WSTGDLEY 87
>SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 201 RSQTPSVSSEMPPRTRWREPQQHNIRCQTSHRT*VRRCYCAS 326
R+ P S+ PP RW+ P Q QT H R Y S
Sbjct: 37 RTAEPLSHSKRPPPRRWKAPLQRCRMSQTQHGYRQGRAYTFS 78
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 245
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 662 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 576
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 245
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,164,070
Number of Sequences: 59808
Number of extensions: 626305
Number of successful extensions: 2101
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -