Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00373
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    29   0.37 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.1  

>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 243 EPASDLAANKRISLLDTPVDASCQSVCGTCRLSAMMDPTVRL*P 112
           E  SD A+ + I + +  +DA  +S CG C +S + D   R+ P
Sbjct: 247 EKRSDGASYRAIRVNNENIDAFTESPCGNCPVSDICDANSRVNP 290


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 149 SLQVPHTDWQEASTGVSRREILL 217
           SL++P TD+   ST +S+RE  L
Sbjct: 141 SLEIPPTDFLSTSTELSKRESCL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,411
Number of Sequences: 5004
Number of extensions: 36596
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)