Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00373
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)             30   1.2  
SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)             30   1.6  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)
          Length = 488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 140 MADSLQVPHTDWQEASTGVSRREILLLAAKSLAGSYKRD*RYPLPR 277
           +ADSLQVP  DW    +  + RE +L   + +  S K + ++ +P+
Sbjct: 404 LADSLQVPTDDWSAVCSNKAIREAVLKDIRIVGNSAKLE-KFEIPQ 448


>SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)
          Length = 328

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -3

Query: 506 QYQYNYSRSLARNECYIIMSTVRSAITSFVSCQLSSLGMLPPSKSRNSIKYTNS 345
           Q +YNY + L  N+  +  +T+  A  SF+   L SL ++  +   N+IK++N+
Sbjct: 196 QIEYNY-KPLFENKSLVFKNTIPKA--SFILADLDSLKIIIRNLLDNAIKFSNN 246


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 144  PTAYRSRTPTGKRRRPACLGGKFFC*RLSHWRAHTNGTS 260
            PT  +   PTG R RP   G K+F    S W     G S
Sbjct: 2125 PTETKPSLPTGTRDRPRKPGDKYFSAMRSKWNYKLLGKS 2163


>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 449 TLLCNIRF-GRGYESNCTDIEEC 514
           T +CN  F G G+  NCTDI+EC
Sbjct: 412 TCICNPGFTGNGF--NCTDIDEC 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,586,112
Number of Sequences: 59808
Number of extensions: 285366
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)