Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00373
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical ...    30   1.0  
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    29   3.2  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    29   3.2  

>AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical
           protein F53G2.1 protein.
          Length = 714

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 252 GTSGIRCRDLRTRDVEYHRVICVSLKVSKRNRICIFDGI 368
           G S +R  D    D++   V C+ L   K  +IC+FD +
Sbjct: 247 GLSNLRFLDCSGTDIDDQLVQCLQLSHPKLKQICVFDSV 285


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 318 RK*HDDIPRPASLGLGSGYR*SRLYEPASDLAANKRISLLD 196
           RK +D + +  SLG+GS YR  + Y+ +  L+  K   LL+
Sbjct: 388 RKLNDILSQINSLGIGSAYRGPQRYQNSYQLSKQKEDKLLE 428


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 318 RK*HDDIPRPASLGLGSGYR*SRLYEPASDLAANKRISLLD 196
           RK +D + +  SLG+GS YR  + Y+ +  L+  K   LL+
Sbjct: 388 RKLNDILSQINSLGIGSAYRGPQRYQNSYQLSKQKEDKLLE 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,853
Number of Sequences: 27780
Number of extensions: 215170
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)