Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00373
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 109 HRLQPHRRIHHGRQPTGPAH 168
           H L+ H R+H G +P   +H
Sbjct: 23  HHLKTHMRLHTGEKPYHCSH 42


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 175 QCCPEPYVDVTFTIQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 394 ECCHPQKVEIPSNIQIRLRLLTF 326
           +CC    V++   IQIR R L +
Sbjct: 243 QCCPEPYVDVTFTIQIRRRTLYY 265


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 515 NIPQYQYNYSRSLARNECYI 456
           N P Y+Y Y R +   E  I
Sbjct: 315 NFPIYKYKYIREIMNKESRI 334


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 515 NIPQYQYNYSRSLARNECYI 456
           N P Y+Y Y R +   E  I
Sbjct: 315 NFPIYKYKYIREIMNKESRI 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,516
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)