Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00373
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30010.1 68415.m03651 expressed protein                             29   1.7  
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    29   2.2  
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04...    29   3.0  
At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi...    27   6.8  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    27   9.0  
At3g13770.1 68416.m01737 pentatricopeptide (PPR) repeat-containi...    27   9.0  

>At2g30010.1 68415.m03651 expressed protein
          Length = 398

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 236 AGSYKRD*RYPLPRPKDAGRGI 301
           AG + RD  YPL R K+ GRGI
Sbjct: 60  AGEWVRDETYPLYRSKECGRGI 81


>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 290 PRP*VSAADTASPVCMSPPVT*PLTKEF--PS*TRRSTPLASRCAGPVGCRP 141
           P P  SA  TA+PV  SPP   PL      P+     TP  +  AGP G  P
Sbjct: 53  PTPTPSATPTAAPV--SPPAGSPLPSSASPPAPPTSLTPDGAPVAGPTGSTP 102


>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 579

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 426 VICQLSTVIARNVATLKKSKFHQIYKFDCVCLL 328
           ++ ++ + +A NV  L KSKFH++   DC+ LL
Sbjct: 122 ILRKIVSWVAYNVVVLHKSKFHEL--SDCIILL 152


>At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 469

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 477 RPKRMLHNNVNCQIGNNVICQLSTVIARNVATLKKSKFHQIYKFDCVC 334
           RP  +L N   C  G+N    +S +  R +    K K+H      C C
Sbjct: 418 RPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSC 465


>At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 567

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 477 RPKRMLHNNVNCQIGNNVICQLSTVIARNVATLKKSKFHQIYKFDCVC 334
           +P  ++ N   C   +N +  +S ++ R V T    +FHQ+    C C
Sbjct: 516 KPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTC 563


>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 850

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 477 RPKRMLHNNVNCQIGNNVICQLSTVIARNVATLKKSKFHQIYKFDCVC 334
           RP R+  N   C   +N +  +STV  R +     ++FH      C C
Sbjct: 799 RPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSC 846


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 KRNRICIFDGISTF*GWQHSE 398
           + N +CIF+  +   GW+HSE
Sbjct: 243 RENMVCIFESYAGDIGWRHSE 263


>At3g13770.1 68416.m01737 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 628

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 474 PKRMLHNNVNCQIGNNVICQLSTVIARNVATLKKSKFHQIYKFDCVC 334
           P R+  N   C   +N     S V  R V+   K++FHQI    C C
Sbjct: 578 PIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSC 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,053,152
Number of Sequences: 28952
Number of extensions: 197756
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)