Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00372
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 29 1.4
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 28 3.1
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528... 28 3.1
11_06_0087 - 19919224-19922304 28 4.2
08_02_0807 + 21411799-21412665 27 5.5
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 27 7.3
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 27 7.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 9.6
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 69 PGGGIGPE-CMGYVRDIFKYIGAPID 143
P G+G E CM V D F+Y+ AP++
Sbjct: 302 PQHGVGAEICMSVVEDSFEYLDAPVE 327
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 69 PGGGIGPE-CMGYVRDIFKYIGAPID 143
P GIG E CM V + F+Y+ AP++
Sbjct: 307 PQHGIGAEICMSVVEESFEYLDAPVE 332
>08_02_1627 -
28348225-28348725,28349061-28349114,28352613-28352810,
28352856-28353380
Length = 425
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 205 VIAYWTSSSLSIVGSMSTTSKSIGAPMY 122
+ YWT+SS +G+ + S+G P Y
Sbjct: 254 LFTYWTTSSRIAIGASISPVSSVGGPQY 281
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 175 SIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPP 71
++VG++S S+ +L++SR Y S P PPP
Sbjct: 104 ALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPP 138
>08_02_0807 + 21411799-21412665
Length = 288
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 286 ALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLE 420
A+R+E+D Y Y+ +PG+ R V R E YA LE
Sbjct: 32 AIRDEVDRYPYVAMDTEFPGIVCR----PVGNFRTTDEFNYANLE 72
>03_02_0693 -
10441253-10441294,10441404-10441511,10441594-10441677,
10441765-10443062,10443111-10444804,10444890-10444957,
10445057-10445186,10445292-10445415,10445551-10445711,
10446714-10446868
Length = 1287
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 140 NRSTDVF-EYVANVSHALRTDTASREHGHRVTTAV 39
N D++ + + + + TDT R+HGHR V
Sbjct: 334 NSEVDIYVDALTTMDSEVETDTEHRDHGHRALVPV 368
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 46 VVTR*PCSLEAVSV-LSAWDTFAT-YSNTSVLLLTSKWWTLTQRW 174
VVTR EAV + W F Y + + S WW Q W
Sbjct: 124 VVTRYVAEWEAVVTRMGRWVDFEDGYKTMDIKFMESVWWVFAQLW 168
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 187 SSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGP 83
S S+ S STT KSI +P N S T + + P
Sbjct: 286 SEKASVFSSQSTTHKSIASPSKKNTSSTPSLGNFP 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,818
Number of Sequences: 37544
Number of extensions: 282257
Number of successful extensions: 776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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