Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00372
(458 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 1e-15
SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32) 27 5.6
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 27 5.6
SB_53479| Best HMM Match : Zot (HMM E-Value=1.1) 27 7.5
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45) 27 7.5
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 27 7.5
SB_23455| Best HMM Match : zf-Sec23_Sec24 (HMM E-Value=7.5) 27 7.5
>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 79.8 bits (188), Expect = 1e-15
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +1
Query: 292 RNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESMK 456
+ ELD++A +++C+S PG+ TRH +ID+VIIR+ TEGEY LEHESV GVVE +K
Sbjct: 89 KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLK 143
Score = 44.0 bits (99), Expect = 6e-05
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 33 AQYGGRHAVTMLPGGGIGPECMGYVRDIFK 122
A +GGRH VT++PG G+GPE + V+ +FK
Sbjct: 60 APFGGRHTVTLIPGDGVGPELVNCVKQMFK 89
>SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 239 CPLAPHRXLNGRYSILDIIIIV--HRWVNVHHFEVNRSTDVFEYVANVSHALRTDTASRE 66
C + P+R RY + D I+ V ++ H VN T+ +EY + + + E
Sbjct: 92 CQVRPYRQHGARYDLTDNIVPVMSRQFAKASHGVVNHLTE-YEYTSIMHYGKNFFGKISE 150
Query: 65 HGHRVTTAVL 36
R+ T ++
Sbjct: 151 DNSRILTTII 160
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 229 AKGQH*NQNXAAYVTSRNVALRNELDMYAYIL 324
A G H Q + V SR + + DMYAY++
Sbjct: 1209 AAGSHVKQKTSQAVLSRKAKINSAKDMYAYLI 1240
>SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 24 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFE--VVDIDPTMDNDDDVQY 197
I + YG R + P G I P C G + IF AP++ + VVDI ++ D V
Sbjct: 296 IQQENYGCRVLDCLNPSGEIPPGCTGLIHWIF----APLEAKTYVVDIPVSIIGGDSVLV 351
Query: 198 AITTI 212
T +
Sbjct: 352 TFTGV 356
>SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)
Length = 523
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 438 TIHGFVFQHSVFTFCVLSDNNNINVLMSGRNARV 337
T + +H TFCVL +++ SG N+ V
Sbjct: 166 TARELILRHPKLTFCVLEKEKELSMHQSGHNSGV 199
>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 736
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 226 GAKGQH*NQNXAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVI 381
G G H + N + VT+ R + Y ++ + GV++RHKD+ + +
Sbjct: 444 GDDGGHFSINGSGLVTTARELDRETIATYTLTVSAYDH-GVSSRHKDVQLTV 494
>SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)
Length = 251
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 97 MHSGPIPPPGSMVTA*RPPYCALGISF 17
+H GP PPP V P C G ++
Sbjct: 183 VHCGPAPPPNHSVITRAPSSCVAGSTY 209
>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
Length = 622
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -2
Query: 166 GSMSTTSKSIGAPMYLNMSRTYP-----MHSGPIPPP 71
G S+ + ++G+PM N+S +P SGP+PPP
Sbjct: 489 GGSSSPNVTLGSPMR-NLSEGFPGGNPLQGSGPVPPP 524
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -2
Query: 166 GSMSTTSKSIGAPMYLNMSRTYP-----MHSGPIPPP 71
G S+ + ++G+PM N+S +P SGP+PPP
Sbjct: 113 GGSSSPNVTLGSPMR-NLSEGFPGGNPLQGSGPVPPP 148
>SB_23455| Best HMM Match : zf-Sec23_Sec24 (HMM E-Value=7.5)
Length = 283
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 421 VPT*RIHLLCSV***QHQCPYVWSQRQGKIYSSVC 317
V T + +LCS CPYVW+ + G S C
Sbjct: 146 VKTGSLPILCSGPCKTFYCPYVWTGKSGDSISKYC 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,459
Number of Sequences: 59808
Number of extensions: 319346
Number of successful extensions: 917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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