Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00372
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 87 8e-18
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 74 4e-14
Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical pr... 68 3e-12
Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical pr... 68 3e-12
AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine r... 32 0.17
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 30 0.70
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 30 0.70
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 30 0.70
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 30 0.70
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 30 0.70
AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical ... 29 1.6
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute (pl... 28 3.8
AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute (pl... 28 3.8
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 27 5.0
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 27 6.6
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 27 8.7
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 27 8.7
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 86.6 bits (205), Expect = 8e-18
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = +1
Query: 274 SRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESM 453
SRNV LR +LD+YA IL+C + P V TRH ID+V+IR+NTEGEY+ LEHE+V G+VES+
Sbjct: 110 SRNVELRTKLDLYANILHCVTIPTVPTRHSGIDIVLIRENTEGEYSGLEHEAVPGIVESI 169
Query: 454 K 456
K
Sbjct: 170 K 170
Score = 64.1 bits (149), Expect = 5e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +3
Query: 24 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAI 203
+P A+YGGRH V LPG GIGPE + ++R+IF + AP++FE V + ++ D D+ A+
Sbjct: 27 LPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDGDMDAAM 85
Query: 204 TTIK 215
I+
Sbjct: 86 LAIE 89
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 218 NGVGLKGNIETKXRQP 265
NGV +KGNIETK P
Sbjct: 91 NGVAIKGNIETKHDDP 106
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 74.1 bits (174), Expect = 4e-14
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Frame = +1
Query: 274 SRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNG----V 441
SRN+ LR +L++YA +L+C + P V +RH ID+VIIR+NTEGEY+ EHE+VN V
Sbjct: 127 SRNLELRRQLNLYANVLHCSTIPTVPSRHTGIDMVIIRENTEGEYSGNEHEAVNAPHPRV 186
Query: 442 VESMK 456
VES+K
Sbjct: 187 VESLK 191
Score = 70.1 bits (164), Expect = 7e-13
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +3
Query: 33 AQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAITTI 212
A+YGGRH VT+LPG GIGPE + +V I + AP+DFEVV++ D +D+ AIT I
Sbjct: 46 ARYGGRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTSKEDASEDLAEAITAI 105
Query: 213 K 215
K
Sbjct: 106 K 106
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2
Query: 218 NGVGLKGNIETKXRQP 265
NGV LKGNIETK P
Sbjct: 108 NGVALKGNIETKFDNP 123
>Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical
protein C37E2.1 protein.
Length = 379
Score = 68.1 bits (159), Expect = 3e-12
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +1
Query: 280 NVALRNELDMYAYILNCKSYPGVATRH-KDIDVVIIRQNTEGEYAMLEHESVNGVVESMK 456
N+ LR LD++A +++ K+ G+ TRH K +D VI+R+ TEGEY+ LEHE V GV+E +K
Sbjct: 125 NMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVREQTEGEYSSLEHELVPGVIECLK 184
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 27 PKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVV 155
P + + VT++PG G+GPE + V+DI K G PI+FE +
Sbjct: 35 PPTELNQKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEI 77
>Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical
protein F43G9.1 protein.
Length = 358
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +1
Query: 274 SRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESM 453
S N+A+R E +YA + C+S G T + ++DVV IR+NTEGEY+ +EHE V GVV+S+
Sbjct: 102 SLNLAVRKEFSLYANVRPCRSLEGHKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSI 161
Query: 454 K 456
K
Sbjct: 162 K 162
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3
Query: 42 GGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDND 182
G VT++PG GIGPE V+ IF+ API ++ VD+ P D
Sbjct: 22 GDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRD 68
>AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein190 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.17
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 87 PECMGYVRDIFKYIGAPIDFEVVDI 161
PE GY IFKY AP+++ VV++
Sbjct: 79 PELAGYPLGIFKYFNAPVEYYVVEV 103
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 387
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 387
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 387
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 174 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 208
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 387
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 173 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 207
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 387
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 169 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 203
>AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical
protein H35B03.1 protein.
Length = 442
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = -2
Query: 280 CVTXHRLPXFGFNVAL*PHTVXLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTY 101
C T + GF V H V + + T SLS + SM+ S P +N S +
Sbjct: 312 CSTALKYDKVGFRVGEDVHHVDIAHIFPDGTYPSLSRLLSMNPPSPRFSRPESVNDSVSP 371
Query: 100 PMHSGPIPPPGSMV 59
+ S P P PG +V
Sbjct: 372 SLMSEP-PTPGGLV 384
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 181 SLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPI-PPPGSMVTA*RPPYCALGIS 20
++ I GS+ +++ S P Y + S + S P+ PPP T P Y A IS
Sbjct: 138 NMHIGGSVMSSNSSTATPSYQSNSTSSYSSSAPVAPPPVPRHTQSIPSYSAPAIS 192
>AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform b protein.
Length = 891
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 6 RGKQKLIPKAQYGGRH-AVTMLPGGGI 83
+G+ PK YGGRH A T LP G+
Sbjct: 438 KGRVLSAPKLLYGGRHRATTALPNQGV 464
>AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform a protein.
Length = 910
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 6 RGKQKLIPKAQYGGRH-AVTMLPGGGI 83
+G+ PK YGGRH A T LP G+
Sbjct: 457 KGRVLSAPKLLYGGRHRATTALPNQGV 483
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 200 SILDIII--IVHRWVNVHHFEVNRSTDVFEYVANVSHALRTDTASREHGH 57
S+L +++ + W+N+H + RS VANV + +R HGH
Sbjct: 64 SVLSVLLSLFTYEWLNLHFSSMTRSRRACFDVANVLETYQ--PRARTHGH 111
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 51 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQ-YAITTI 212
H +L G G V+ + IG +D VV++ PT D+D+ +Q Y TTI
Sbjct: 378 HNEPLLLVGETGVGKTSVVQAVADLIGVTLD--VVNVSPTSDSDELIQGYKPTTI 430
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 118 NMSRTYPMHSGPIPPPGSMVTA*RPPY 38
N+ P+ S P+PPPG + PPY
Sbjct: 185 NLPYPPPLMSTPMPPPGYSMCYMMPPY 211
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 118 NMSRTYPMHSGPIPPPGSMVTA*RPPY 38
N+ P+ S P+PPPG + PPY
Sbjct: 353 NLPYPPPLMSTPMPPPGYSMCYMMPPY 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,773
Number of Sequences: 27780
Number of extensions: 231594
Number of successful extensions: 630
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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