Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00372
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.39 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.39 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.39 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.39 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 DVVIIRQNTEGEYAMLEHESVNGVV 444
           DV++IR+  EG   + E E +  V+
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIKNVL 172


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 DVVIIRQNTEGEYAMLEHESVNGVV 444
           DV++IR+  EG   + E E +  V+
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIKNVL 183


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 DVVIIRQNTEGEYAMLEHESVNGVV 444
           DV++IR+  EG   + E E +  V+
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIKNVL 183


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 DVVIIRQNTEGEYAMLEHESVNGVV 444
           DV++IR+  EG   + E E +  V+
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIKNVL 172


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 280 NVALRNELDM-YAYILNCKSY 339
           + +L N+ +  ++Y+LNCK+Y
Sbjct: 18  SASLENDNEFGFSYLLNCKNY 38


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 221 GVGLKGNIETKXRQPMXRHAMWLSETN 301
           G+GL+G+  +   QP     MW S+T+
Sbjct: 202 GLGLQGHNPSSGLQPGEGLPMWKSDTS 228


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 411 YVGTRIREWCGRV 449
           Y+ TR+  WC RV
Sbjct: 332 YMQTRVPAWCDRV 344


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 111 DIFKYIGAPIDFEVVDIDPTMDNDD 185
           ++ KY+G    F    I  TM+N D
Sbjct: 105 NVVKYLGGKHKFISKKIKKTMENKD 129


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 92  VHGIRSRHIQIHRCSY*LRSGGH*PNDGQ 178
           +HGI S+H Q H        G H P   Q
Sbjct: 191 LHGILSQHPQQHGLGVQNGYGRHLPGHAQ 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,671
Number of Sequences: 438
Number of extensions: 2772
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)