Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56731 Cluster: PREDICTED: similar to CG2910-PB,...    77   2e-13
UniRef50_Q16MW3 Cluster: RNA recognition motif protein split end...    55   1e-06
UniRef50_Q7KMJ6 Cluster: BcDNA.GH11110; n=6; Endopterygota|Rep: ...    45   0.001
UniRef50_Q5KKR4 Cluster: Expressed protein; n=2; Filobasidiella ...    33   5.1  
UniRef50_Q9VB74 Cluster: CG6066-PA; n=3; Sophophora|Rep: CG6066-...    32   8.9  
UniRef50_O02360 Cluster: Putative uncharacterized protein; n=8; ...    32   8.9  

>UniRef50_UPI0000D56731 Cluster: PREDICTED: similar to CG2910-PB,
           isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG2910-PB, isoform B - Tribolium castaneum
          Length = 728

 Score = 77.0 bits (181), Expect = 2e-13
 Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSD---XXXXXXXXXXXXXXXXXXXXYVSP 424
           V+I+NMKRSS RD+ PRSKR+RSS+GRYDDSSD                       YVSP
Sbjct: 22  VRIQNMKRSSDRDTPPRSKRSRSSMGRYDDSSDERLTPERVRRRGSRNRSPSPRPRYVSP 81

Query: 425 HRDDYVRSRDARDESVRSY-YKVLCVSAL 508
           HRD+Y+R  +      R+Y YKVLCVSAL
Sbjct: 82  HRDEYLRPPE------RAYPYKVLCVSAL 104


>UniRef50_Q16MW3 Cluster: RNA recognition motif protein split ends;
           n=1; Aedes aegypti|Rep: RNA recognition motif protein
           split ends - Aedes aegypti (Yellowfever mosquito)
          Length = 663

 Score = 54.8 bits (126), Expect = 1e-06
 Identities = 38/83 (45%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSD----XXXXXXXXXXXXXXXXXXXXYVS 421
           VKIRNMKRS+SRDS  RSKR R SIGRY+ SSD                        Y S
Sbjct: 14  VKIRNMKRSASRDSPARSKR-RGSIGRYEGSSDERVTPDRMRRRVARSPSPRGGSTRYAS 72

Query: 422 PHRDDYVRSRDARDESVRSY-YK 487
           PHR++Y  SR  R+     Y YK
Sbjct: 73  PHREEY--SRGGRESGSERYSYK 93


>UniRef50_Q7KMJ6 Cluster: BcDNA.GH11110; n=6; Endopterygota|Rep:
           BcDNA.GH11110 - Drosophila melanogaster (Fruit fly)
          Length = 793

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSK----RTRSSIGR-YDDSS----DXXXXXXXXXXXXXXXXXX 406
           +KI NMKRS+SR   P S+    R   S+GR YD+ S    D                  
Sbjct: 15  IKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSP 74

Query: 407 XXYVSPHRDDYVRSRDARDESVRSYYKVLCVSAL 508
             Y SPHR+ Y+R     +    + YKVLCVSAL
Sbjct: 75  SRYGSPHREPYMRGPPPAERP--AGYKVLCVSAL 106


>UniRef50_Q5KKR4 Cluster: Expressed protein; n=2; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 503

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 464 HLEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYR 339
           H  HH    +H D++ H  R+  GSV  V    G +  Q+YR
Sbjct: 191 HHHHHRRHHDHDDDLDHKQRSRAGSVSSVPDTEGLNESQAYR 232


>UniRef50_Q9VB74 Cluster: CG6066-PA; n=3; Sophophora|Rep: CG6066-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 463

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 263 RNMKRSSSRDSMPRSKRTRSSIGRYDDSS 349
           R+ +RS  +D++PR +RTRSS  R   SS
Sbjct: 59  RSSRRSREKDAVPRRRRTRSSPSRSSSSS 87


>UniRef50_O02360 Cluster: Putative uncharacterized protein; n=8;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 739

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 171 QTLITQQITENLNLARTNSY*YVD--NYFKIITFTSTLFNVNLKLEALISIKIIDH 10
           QTL  + I++  NL    +Y Y+D  NY ++I  T T FN  L+ +   +++  D+
Sbjct: 107 QTLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,761,544
Number of Sequences: 1657284
Number of extensions: 6836705
Number of successful extensions: 16693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16685
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)