Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    28   5.1  
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436...    28   5.1  
06_01_0923 + 7129891-7130211,7130610-7131068                           28   5.1  

>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 485 CNSCGQIHLEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHTYQYCCVSVL 306
           C  CG++   +  NA+   D + H    G  S +   L+     ++S  H Y   C++VL
Sbjct: 307 CFKCGELEPSYGPNAKGSPDIIHHARYVGVLSTIRHGLMVFQCNKESCGHFYHPKCIAVL 366

Query: 305 I 303
           +
Sbjct: 367 L 367


>07_03_1777 +
           29442542-29442652,29443394-29443455,29443540-29443681,
           29444043-29444261,29444374-29444440,29444883-29445288,
           29445669-29445816,29445903-29446063,29446320-29446419,
           29446522-29446596,29446677-29446811,29446921-29447013,
           29447475-29447657,29447738-29447842,29448614-29448772,
           29449142-29449186,29449296-29449517,29449775-29449881,
           29449971-29450027,29450132-29450213,29450291-29450455
          Length = 947

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 296 YYHATNFASYCEFSRNSISISMLRGKPIMK 207
           YY  +N+ S+ E+   S+SI +  G P M+
Sbjct: 427 YYELSNYLSFNEWFHGSLSIEISNGHPNMR 456


>06_01_0923 + 7129891-7130211,7130610-7131068
          Length = 259

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -1

Query: 144 ENLNLARTNSY*YVDNYFK-------IITFTSTLFNVNLKLEALISIKIIDHY 7
           +N+++ RTNS  Y+ NYF+          F    F        +IS++++D Y
Sbjct: 128 DNISVVRTNSMKYIPNYFRKAQLSKMFFLFPDPHFKEKNHRRRVISMQLLDEY 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,373,816
Number of Sequences: 37544
Number of extensions: 173851
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)