Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)                      32   0.32 
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_17435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)                 28   5.3  
SB_55165| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)                    27   9.2  

>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
          Length = 224

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 463 ISSITRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITR 284
           +++ TR HV I  R H++T R R   +T      +T  RA V     A     +R  +  
Sbjct: 81  VATRTRAHVAIRTRAHVAT-RTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRAHVAT 139

Query: 283 RTSLHIA 263
           RT  H+A
Sbjct: 140 RTRSHVA 146



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -3

Query: 451 TRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITRRTSL 272
           TR HV I  R H++T R R   +       +T  RA V     A     +R  +  RT  
Sbjct: 69  TRAHVAIRTRAHVAT-RTRAHVAIRTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRA 127

Query: 271 HIA 263
           H+A
Sbjct: 128 HVA 130


>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 461 LEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHT 333
           L   +  + HR+ +THI   G  +V++  LV G  + Q Y+++
Sbjct: 111 LSSRDGGQEHRNSITHISNGGMFTVVNGCLVRGTASIQCYQYS 153


>SB_17435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 353 RQSYRHTYQYCCVSVLIAA---YYHATNFASYCEFS 255
           R SYR TY    + VL+ A   + HA + A +C  S
Sbjct: 5   RMSYRQTYVVAIIVVLVVASLGFVHANDGAQHCMMS 40


>SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)
          Length = 459

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 353 RQSYRHTYQYCCVSVLIAA---YYHATNFASYCEFS 255
           R SYR TY    + VL+ A   + HA + A +C  S
Sbjct: 5   RMSYRQTYVVAIIVVLVVASLGFVHANDGAQHCMMS 40


>SB_55165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 244 SLSLCYAVSQS*KLTSTNHYPKRITNTNHSADH*KPQSCTN 122
           +L+L    +QS  + + N YP+R  + N   D+ + Q+CT+
Sbjct: 42  NLALSKPATQS-SIDANNGYPERAVDGNTDGDYHRGQTCTH 81


>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
          Length = 1442

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 310 F*SRHTITRRTSLHIANFHVIRSLSLCYAVSQS*KLTSTNH 188
           F SRHT+T R  LH+  +    S  L  A+ Q   + S++H
Sbjct: 517 FTSRHTVTNRARLHLHRY----SKFLVMALGQMYSIVSSSH 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,598
Number of Sequences: 59808
Number of extensions: 224144
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)