Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145664-1|AAD38639.1|  793|Drosophila melanogaster BcDNA.GH1111...    45   7e-05
AE013599-555|AAF59160.1|  793|Drosophila melanogaster CG2910-PB,...    45   7e-05
AE013599-554|AAM68878.1|  793|Drosophila melanogaster CG2910-PA,...    45   7e-05
BT003485-1|AAO39488.1|  328|Drosophila melanogaster SD13756p pro...    33   0.23 
AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA...    32   0.53 
AE014134-3330|AAX52672.1|  389|Drosophila melanogaster CG33511-P...    28   8.6  

>AF145664-1|AAD38639.1|  793|Drosophila melanogaster BcDNA.GH11110
           protein.
          Length = 793

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSK----RTRSSIGR-YDDSS----DXXXXXXXXXXXXXXXXXX 406
           +KI NMKRS+SR   P S+    R   S+GR YD+ S    D                  
Sbjct: 15  IKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSP 74

Query: 407 XXYVSPHRDDYVRSRDARDESVRSYYKVLCVSAL 508
             Y SPHR+ Y+R     +    + YKVLCVSAL
Sbjct: 75  SRYGSPHREPYMRGPPPAERP--AGYKVLCVSAL 106


>AE013599-555|AAF59160.1|  793|Drosophila melanogaster CG2910-PB,
           isoform B protein.
          Length = 793

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSK----RTRSSIGR-YDDSS----DXXXXXXXXXXXXXXXXXX 406
           +KI NMKRS+SR   P S+    R   S+GR YD+ S    D                  
Sbjct: 15  IKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSP 74

Query: 407 XXYVSPHRDDYVRSRDARDESVRSYYKVLCVSAL 508
             Y SPHR+ Y+R     +    + YKVLCVSAL
Sbjct: 75  SRYGSPHREPYMRGPPPAERP--AGYKVLCVSAL 106


>AE013599-554|AAM68878.1|  793|Drosophila melanogaster CG2910-PA,
           isoform A protein.
          Length = 793

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +2

Query: 254 VKIRNMKRSSSRDSMPRSK----RTRSSIGR-YDDSS----DXXXXXXXXXXXXXXXXXX 406
           +KI NMKRS+SR   P S+    R   S+GR YD+ S    D                  
Sbjct: 15  IKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSP 74

Query: 407 XXYVSPHRDDYVRSRDARDESVRSYYKVLCVSAL 508
             Y SPHR+ Y+R     +    + YKVLCVSAL
Sbjct: 75  SRYGSPHREPYMRGPPPAERP--AGYKVLCVSAL 106


>BT003485-1|AAO39488.1|  328|Drosophila melanogaster SD13756p
           protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 263 RNMKRSSSRDSMPRSKRTRSSIGRYDDSS 349
           R+++RS  +D++PR +RTRSS  R   SS
Sbjct: 77  RSLRRSREKDAVPRRRRTRSSPSRSSSSS 105


>AE014297-4072|AAF56669.1|  463|Drosophila melanogaster CG6066-PA
           protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 263 RNMKRSSSRDSMPRSKRTRSSIGRYDDSS 349
           R+ +RS  +D++PR +RTRSS  R   SS
Sbjct: 59  RSSRRSREKDAVPRRRRTRSSPSRSSSSS 87


>AE014134-3330|AAX52672.1|  389|Drosophila melanogaster CG33511-PA
           protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -1

Query: 165 LITQQITENLNLARTNSY*YVDNYFKIITFTSTLFNVNLKLEALISIKIIDHY 7
           L+ + +T++    R N Y  +D+Y  ++   S L   ++  E   ++KI + Y
Sbjct: 122 LVLEDLTQDYRHLRANEYYTLDHYKIVLEHLSELHAASIAWEEKENVKIYESY 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,104
Number of Sequences: 53049
Number of extensions: 320211
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)