Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    26   0.26 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.46 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.5  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 329 QYCCVSVLIAAYYHATNFASYCEFSRNSI-SISMLRGKPIMK 207
           +Y  +    AA+ +A     YCE  +NSI  +SM  G P+ K
Sbjct: 46  RYAFLGAFEAAHLNAEGMKKYCETYKNSIYDVSMTFG-PVPK 86


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 479 SCGQIHLEHHENA--RNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHTYQYCCVSVL 306
           S   I LEH E    R H   V +I  A   S+  VV+    H R+ + H     CV  +
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVFVNNILAASACSLF-VVIFHFAHPREEFNHWTVMRCVQAM 316

Query: 305 IA 300
           IA
Sbjct: 317 IA 318


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 455 HHENARNHRDEVT 417
           HH+NAR H   VT
Sbjct: 121 HHDNARPHTSLVT 133


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 455 HHENARNHRDEVT 417
           HH+NAR H   VT
Sbjct: 243 HHDNARPHTSLVT 255


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 335 TYQYCCVSVLIAAYY 291
           T+ YC   +LI  YY
Sbjct: 217 TFSYCIPMILIIYYY 231


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 378 DVEYAPLARAVDMCHLIAMITCVLVMLEMNLSAAITKYYVLVL 506
           + E  P+ +A+  CH   + TC +   + NLS   +    L+L
Sbjct: 698 EAEPQPIGKALSKCHNRNVTTCNM-FRKTNLSGDSSSGTTLLL 739


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,714
Number of Sequences: 438
Number of extensions: 2129
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)