Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00371
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    29   2.5  
At1g63100.1 68414.m07128 scarecrow transcription factor family p...    28   3.2  
At5g24840.1 68418.m02936 expressed protein contains Pfam profile...    28   4.3  
At3g60000.1 68416.m06699 hypothetical protein  contains Pfam pro...    27   9.9  
At1g53140.1 68414.m06017 dynamin family protein low similarity t...    27   9.9  
At1g21600.1 68414.m02700 expressed protein similar to hypothetic...    27   9.9  

>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 342 IALTSVEARNEYDVEYAPLARAVDMCHLI 428
           I L ++E R E   E A +ARA D CHL+
Sbjct: 411 IDLENLEKRREMLNELASVARASDSCHLV 439


>At1g63100.1 68414.m07128 scarecrow transcription factor family
           protein similar to GI:1497987 from [Arabidopsis
           thaliana] (Cell (1996) In press)
          Length = 658

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = -3

Query: 400 ARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITRRTSLHIAN----------FHV 251
           A G  STS S  + +L   +  PTN +  P+  R     RT+ +I N          F +
Sbjct: 215 ASGGSSTSASSESRSLSHRVPEPTNGSRNPYSHRGATEERTTGNINNNNNRNDLQRDFEL 274

Query: 250 IRSLSLCYAVSQS*KLTSTNHYPKR 176
           +  L+ C    +S  + + NH+  R
Sbjct: 275 VNLLTGCLDAIRSRNIAAINHFIAR 299


>At5g24840.1 68418.m02936 expressed protein contains Pfam profile
           PF02390: Putative methyltransferase
          Length = 251

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 144 ENLNLARTNSY*YVDNYFK 88
           EN+++ RTNS  Y+ NYF+
Sbjct: 120 ENISVVRTNSMKYIPNYFE 138


>At3g60000.1 68416.m06699 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 451

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 497 HIVLCNSCGQIHLEHHENARN 435
           H + CNS  Q HL+HH+  R+
Sbjct: 49  HSLTCNSPKQHHLQHHQIQRS 69


>At1g53140.1 68414.m06017 dynamin family protein low similarity to
           dynamin-like protein E [Arabidopsis thaliana]
           GI:19423872; contains Pfam profile PF00350: Dynamin
           family
          Length = 817

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 DSGSSK*AFMIGLPRSIEIEIELRENSQYEAK 279
           D+   + AF++G    I +E  L +NS+YE K
Sbjct: 508 DTACDRLAFVLGSLFEIALERNLNQNSEYEKK 539


>At1g21600.1 68414.m02700 expressed protein similar to hypothetical
           protein GB:AAD41412 GI:5263310 from [Arabidopsis
           thaliana]
          Length = 328

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 357 VEARNEYDVEYAPLARAV 410
           V+ + +YDVEY PLA A+
Sbjct: 78  VDNKKDYDVEYDPLAAAI 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,525
Number of Sequences: 28952
Number of extensions: 149541
Number of successful extensions: 375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)