Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00370
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   7.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.5  

>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 483 QLLQSTMCYALHPKASDEIVKDTLYREYKKYGD 581
           +L+QS  C   H K  DE +K  +  E   Y D
Sbjct: 175 RLIQSMSCMLRHAKLEDEFMKAYISEEDVGYAD 207


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 416 VDMCHLIAMITCVLVMLEMN 475
           VD+C ++ ++TC+L  L +N
Sbjct: 262 VDLCKILIILTCMLEELSLN 281


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 310 RSKRTRSSIGRYDDSSD 360
           RS RTRS+ GRY D+ D
Sbjct: 63  RSGRTRSNPGRYVDTDD 79


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 446 TCVLVMLEMNLSAAITKYYVLCFT 517
           TC+LVM   +L  +I + Y +CFT
Sbjct: 840 TCILVMDFNSLYPSIIQEYNICFT 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,713
Number of Sequences: 5004
Number of extensions: 43200
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)