Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00370
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    28   7.4  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    28   7.4  
06_01_0923 + 7129891-7130211,7130610-7131068                           28   7.4  
04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824...    27   9.8  

>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 528 SDEIVKDTLYREYKKYGDFSIKISHELDERVAYICFRSAED 650
           S  I K+ L  E+KK+G     I+   D+  AYI F   ED
Sbjct: 132 SSSISKEELEEEFKKFGKVD-GIAFSRDQTSAYIDFDKLED 171


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -1

Query: 493 CNSCGQIHLEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHTYQYCCVSVL 314
           C  CG++   +  NA+   D + H    G  S +   L+     ++S  H Y   C++VL
Sbjct: 307 CFKCGELEPSYGPNAKGSPDIIHHARYVGVLSTIRHGLMVFQCNKESCGHFYHPKCIAVL 366

Query: 313 I 311
           +
Sbjct: 367 L 367


>06_01_0923 + 7129891-7130211,7130610-7131068
          Length = 259

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -3

Query: 152 ENLNLARTNSY*YVDNYFK-------IITFTSTLFNVNLKLEALISIKIIDHY 15
           +N+++ RTNS  Y+ NYF+          F    F        +IS++++D Y
Sbjct: 128 DNISVVRTNSMKYIPNYFRKAQLSKMFFLFPDPHFKEKNHRRRVISMQLLDEY 180


>04_04_0359 +
           24679907-24680146,24680511-24680939,24681111-24682402,
           24682486-24682737,24682818-24682928,24683016-24683076,
           24683178-24683270,24683348-24683533
          Length = 887

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 501 MCYALHPKASDEIVKDTLYREYKKYGDFSIKISH 602
           +C  +HPK    +V D L   +K+Y +F I + +
Sbjct: 742 ICLLIHPKDGTVVVLDPLDYSHKQYKEFLIILQY 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,262
Number of Sequences: 37544
Number of extensions: 243870
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)