Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00370
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                38   0.007
SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)                      32   0.35 
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_55165| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55474| Best HMM Match : Astacin (HMM E-Value=0)                     28   5.7  
SB_17435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)                 28   7.6  

>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = +3

Query: 531 DEIVKDTLYREYKKYGDFSIKISHELDERVAYICFRSAED 650
           D+ +K++++ E+KK+GD S+ +    ++R A + FRS +D
Sbjct: 101 DQPMKESIFHEFKKFGDISVHLFGRGNDRYAVLYFRSLDD 140


>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
          Length = 224

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = -2

Query: 471 ISSITRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITR 292
           +++ TR HV I  R H++T R R   +T      +T  RA V     A     +R  +  
Sbjct: 81  VATRTRAHVAIRTRAHVAT-RTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRAHVAT 139

Query: 291 RTSLHIANFHRN 256
           RT  H+A   R+
Sbjct: 140 RTRSHVATRTRS 151



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 459 TRTHVIIAMR*HISTARARGAYSTSYSFRASTLVRAIVIPTNTAACPF*SRHTITRRTSL 280
           TR HV I  R H++T R R   +       +T  RA V     A     +R  +  RT  
Sbjct: 69  TRAHVAIRTRAHVAT-RTRAHVAIRTRAHVATRTRAHVATRTRAHVATRTRAHVATRTRA 127

Query: 279 HIA 271
           H+A
Sbjct: 128 HVA 130


>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 469 LEHHENARNHRDEVTHIDRAG*GSVLDVVLVPGFHARQSYRHT 341
           L   +  + HR+ +THI   G  +V++  LV G  + Q Y+++
Sbjct: 111 LSSRDGGQEHRNSITHISNGGMFTVVNGCLVRGTASIQCYQYS 153


>SB_55165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 261 RN*SLSLCYAVSQS*KLTSTNHYPKRITNTNHSADH*KPQSCTN 130
           +N +L+L    +QS  + + N YP+R  + N   D+ + Q+CT+
Sbjct: 39  KNLNLALSKPATQS-SIDANNGYPERAVDGNTDGDYHRGQTCTH 81


>SB_55474| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 523

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 544 LTISSDALGCKA*HIVLCNSCGQIHLEHHENARNHRDEVTHI 419
           LTI   AL CK  +I+  +  G      HE++R  RDE  H+
Sbjct: 155 LTIGDPALRCKTGNII--HELGHAVGFFHEHSRPDRDEFVHV 194


>SB_17435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 361 RQSYRHTYQYCCVSVLIAA---YYHATNFASYCEFS 263
           R SYR TY    + VL+ A   + HA + A +C  S
Sbjct: 5   RMSYRQTYVVAIIVVLVVASLGFVHANDGAQHCMMS 40


>SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)
          Length = 459

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 361 RQSYRHTYQYCCVSVLIAA---YYHATNFASYCEFS 263
           R SYR TY    + VL+ A   + HA + A +C  S
Sbjct: 5   RMSYRQTYVVAIIVVLVVASLGFVHANDGAQHCMMS 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,724
Number of Sequences: 59808
Number of extensions: 308512
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)