Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00370
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC103507-1|AAI03508.1| 969|Homo sapiens RBM15 protein protein. 49 1e-05
BC098140-1|AAH98140.1| 969|Homo sapiens RBM15 protein protein. 49 1e-05
BC062316-1|AAH62316.1| 957|Homo sapiens RBM15 protein protein. 49 1e-05
BC047479-1|AAH47479.1| 959|Homo sapiens RBM15 protein protein. 49 1e-05
BC006397-1|AAH06397.2| 957|Homo sapiens RBM15 protein protein. 49 1e-05
AL355488-1|CAI19077.1| 977|Homo sapiens RNA binding motif prote... 49 1e-05
AK022541-1|BAB14088.1| 925|Homo sapiens protein ( Homo sapiens ... 49 1e-05
AJ303090-1|CAC38829.1| 1883|Homo sapiens OTT-MAL protein. 49 1e-05
AJ303089-1|CAC38828.1| 1905|Homo sapiens OTT-MAL protein. 49 1e-05
AJ297259-2|CAC38862.1| 969|Homo sapiens one twenty two protein ... 49 1e-05
AJ297259-1|CAC38861.1| 957|Homo sapiens one twenty two protein ... 49 1e-05
AF368064-1|AAK54724.1| 957|Homo sapiens putative RNA-binding mo... 49 1e-05
AF368063-1|AAK54723.1| 977|Homo sapiens putative RNA-binding mo... 49 1e-05
AF368062-1|AAK54722.1| 969|Homo sapiens putative RNA-binding mo... 49 1e-05
BC103493-1|AAI03494.1| 969|Homo sapiens RBM15 protein protein. 47 5e-05
AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated... 35 0.29
AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated... 35 0.29
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 35 0.29
AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated ... 35 0.29
AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated ... 35 0.29
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 35 0.29
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 35 0.29
>BC103507-1|AAI03508.1| 969|Homo sapiens RBM15 protein protein.
Length = 969
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>BC098140-1|AAH98140.1| 969|Homo sapiens RBM15 protein protein.
Length = 969
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>BC062316-1|AAH62316.1| 957|Homo sapiens RBM15 protein protein.
Length = 957
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 157 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 207
>BC047479-1|AAH47479.1| 959|Homo sapiens RBM15 protein protein.
Length = 959
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 167 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 217
>BC006397-1|AAH06397.2| 957|Homo sapiens RBM15 protein protein.
Length = 957
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 157 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 207
>AL355488-1|CAI19077.1| 977|Homo sapiens RNA binding motif protein
15 protein.
Length = 977
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AK022541-1|BAB14088.1| 925|Homo sapiens protein ( Homo sapiens
cDNA FLJ12479 fis, clone NT2RM1001059, weakly similar to
NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB4. ).
Length = 925
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 133 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 183
>AJ303090-1|CAC38829.1| 1883|Homo sapiens OTT-MAL protein.
Length = 1883
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AJ303089-1|CAC38828.1| 1905|Homo sapiens OTT-MAL protein.
Length = 1905
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AJ297259-2|CAC38862.1| 969|Homo sapiens one twenty two protein
protein.
Length = 969
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AJ297259-1|CAC38861.1| 957|Homo sapiens one twenty two protein
protein.
Length = 957
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AF368064-1|AAK54724.1| 957|Homo sapiens putative RNA-binding motif
protein 15 long form protein.
Length = 957
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AF368063-1|AAK54723.1| 977|Homo sapiens putative RNA-binding motif
protein 15 short form plus alternative exon protein.
Length = 977
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>AF368062-1|AAK54722.1| 969|Homo sapiens putative RNA-binding motif
protein 15 short form protein.
Length = 969
Score = 49.2 bits (112), Expect = 1e-05
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR ED
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPED 227
>BC103493-1|AAI03494.1| 969|Homo sapiens RBM15 protein protein.
Length = 969
Score = 47.2 bits (107), Expect = 5e-05
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +3
Query: 513 LHPKASDEIVKDTLYREYKKYGDFSIKISH-----ELDERVAYICFRSAED 650
L + SDE V+D L+ E+K++GD S+KISH DERVA++ FR E+
Sbjct: 177 LGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEN 227
>AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 84 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 127
>AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 304 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 347
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 345 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 388
>AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 84 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 127
>AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 304 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 347
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 345 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 388
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 34.7 bits (76), Expect = 0.29
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 522 KASDEIVKDTLYREYKKYGDF-SIKISHELDERVAYICFRSAED 650
+++D +KD L+ E+KK+G S++I +ER + FR ED
Sbjct: 345 RSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQED 388
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,856,198
Number of Sequences: 237096
Number of extensions: 1352838
Number of successful extensions: 2288
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2288
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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