Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00370
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 33 0.23
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 33 0.23
Z81527-9|CAI91172.1| 577|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z81527-8|CAI91171.1| 537|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z81527-7|CAI91170.1| 517|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical pr... 32 0.41
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 29 2.9
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 29 2.9
AL132877-8|CAD91705.1| 339|Caenorhabditis elegans Hypothetical ... 27 8.7
AL132877-7|CAC70108.1| 686|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 534 EIVKDTLYREYKKYGDFSIKI--SHELDERVAYICF 635
E +K L +E KKY F IK+ + E DER+AY+ F
Sbjct: 48 EQIKQYLTQELKKYAPFEIKVVKNPEEDERLAYVNF 83
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 534 EIVKDTLYREYKKYGDFSIKI--SHELDERVAYICF 635
E +K L +E KKY F IK+ + E DER+AY+ F
Sbjct: 48 EQIKQYLTQELKKYAPFEIKVVKNPEEDERLAYVNF 83
>Z81527-9|CAI91172.1| 577|Caenorhabditis elegans Hypothetical
protein F35E12.7d protein.
Length = 577
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 179 QTLITQQITENLNLARTNSY*YVD--NYFKIITFTSTLFNVNLKLEALISIKIIDH 18
QTL + I++ NL +Y Y+D NY ++I T T FN L+ + +++ D+
Sbjct: 107 QTLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-8|CAI91171.1| 537|Caenorhabditis elegans Hypothetical
protein F35E12.7c protein.
Length = 537
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 179 QTLITQQITENLNLARTNSY*YVD--NYFKIITFTSTLFNVNLKLEALISIKIIDH 18
QTL + I++ NL +Y Y+D NY ++I T T FN L+ + +++ D+
Sbjct: 107 QTLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-7|CAI91170.1| 517|Caenorhabditis elegans Hypothetical
protein F35E12.7b protein.
Length = 517
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 179 QTLITQQITENLNLARTNSY*YVD--NYFKIITFTSTLFNVNLKLEALISIKIIDH 18
QTL + I++ NL +Y Y+D NY ++I T T FN L+ + +++ D+
Sbjct: 107 QTLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical
protein F35E12.7a protein.
Length = 739
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 179 QTLITQQITENLNLARTNSY*YVD--NYFKIITFTSTLFNVNLKLEALISIKIIDH 18
QTL + I++ NL +Y Y+D NY ++I T T FN L+ + +++ D+
Sbjct: 107 QTLPYEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTYFNATLETDKYFTVQAADN 162
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 644 CTSEADVGYSLIQLMGYFYTKVTILLI 564
C+ D+GY L +G FY V IL+I
Sbjct: 170 CSVSTDLGYVLYSSLGSFYIPVVILII 196
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 644 CTSEADVGYSLIQLMGYFYTKVTILLI 564
C+ D+GY L +G FY V IL+I
Sbjct: 170 CSVSTDLGYVLYSSLGSFYIPVVILII 196
>AL132877-8|CAD91705.1| 339|Caenorhabditis elegans Hypothetical
protein Y105E8B.2b protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 525 ASDEIVKDTLYREYKKYGDFSIKISH 602
AS E +K+ ++R Y+++ D S +ISH
Sbjct: 49 ASQETLKNNVFRNYQQFIDASKEISH 74
>AL132877-7|CAC70108.1| 686|Caenorhabditis elegans Hypothetical
protein Y105E8B.2a protein.
Length = 686
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 525 ASDEIVKDTLYREYKKYGDFSIKISH 602
AS E +K+ ++R Y+++ D S +ISH
Sbjct: 49 ASQETLKNNVFRNYQQFIDASKEISH 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,489
Number of Sequences: 27780
Number of extensions: 235439
Number of successful extensions: 615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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