Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00370
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    29   3.5  
At5g24840.1 68418.m02936 expressed protein contains Pfam profile...    28   6.2  

>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 IALTSVEARNEYDVEYAPLARAVDMCHLI 436
           I L ++E R E   E A +ARA D CHL+
Sbjct: 411 IDLENLEKRREMLNELASVARASDSCHLV 439


>At5g24840.1 68418.m02936 expressed protein contains Pfam profile
           PF02390: Putative methyltransferase
          Length = 251

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 152 ENLNLARTNSY*YVDNYFK 96
           EN+++ RTNS  Y+ NYF+
Sbjct: 120 ENISVVRTNSMKYIPNYFE 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,077
Number of Sequences: 28952
Number of extensions: 209958
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)