Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00369
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             145   3e-35
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         101   5e-22
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.5  
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         29   3.2  
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   29   4.3  
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.3  
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.3  
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         29   4.3  
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.3  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                29   4.3  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)                29   5.7  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   7.5  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  
SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   9.9  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  145 bits (352), Expect = 3e-35
 Identities = 65/85 (76%), Positives = 76/85 (89%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDE 687
           +RVFGA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE
Sbjct: 189 ARVFGALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDE 248

Query: 688 DSFKRQFSKYIKLGVTADAIEAIYK 762
           +S+KRQFS YIK GV AD+IE IYK
Sbjct: 249 ESYKRQFSAYIKNGVDADSIEGIYK 273



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/83 (53%), Positives = 51/83 (61%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
           ++ +AY+HELP +GVKVGLTNYAAAY TG                          EYNVE
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVE 165

Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
            VD  PGAFRC+LDVGLART+TG
Sbjct: 166 SVDGSPGAFRCFLDVGLARTSTG 188



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 105 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 230
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  101 bits (243), Expect = 5e-22
 Identities = 48/83 (57%), Positives = 53/83 (63%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
           I+CAAY+HELPRYGVKVGLTNYAAAY TG                          EYNVE
Sbjct: 11  IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVE 70

Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
            +D  PGAFRC+LDVGLART+TG
Sbjct: 71  SIDGSPGAFRCFLDVGLARTSTG 93



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGGLNVPH 564
           +RVFGA+KGAVDGGL +PH
Sbjct: 94  ARVFGALKGAVDGGLEIPH 112


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 589 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 723
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 717 VLAELSLERILIILFKTSHVFSNMQTKDVSPVYFSIEL--FGFCIIARESFDGMRNIEAT 544
           VLAE+ +E+     F        +  +    V +++E   FGF +   E  D MR + +T
Sbjct: 329 VLAEVPIEKRAAPTFDLD--LDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLST 386

Query: 543 VNSTLHSSKDTRPVVVRAK 487
           ++S         PV++R K
Sbjct: 387 ISSVFDPLNFAAPVIMRGK 405


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
           + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 380 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIF 213
           ++ +  ++L  D ++     L   PS    A+ +NKQ T+Y +F P  G LA   F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
           + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
           + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
           + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 380 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIF 213
           ++ +  ++L  D ++     L   PS    A+ +NKQ T+Y +F P  G LA   F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
           + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609  ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
            + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 881  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 609  ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
            + FGF +   E  D MR + +T++S         PV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199


>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
          Length = 762

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 663 HVFSNMQTKDVSPVYFSIELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVV--VRA 490
           H ++N   +  SP      + G C  A+ES    R+ + TVN  +  S DT+ ++  V A
Sbjct: 369 HPYTNHSLRYTSPFVLFQAVQGGCG-AQESSGCYRDTDETVNPAVKYSMDTKQLLPSVSA 427

Query: 489 KPTSK*HLNAPGP 451
           +P S+   N P P
Sbjct: 428 RPYSR-VANRPPP 439


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 128 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 21
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = +3

Query: 180  PKYRLIVRLSNKDVTCQVAYSRIEGTILCALLIHMSCHVMV*RLV*QIMLQHIQLVCY*H 359
            P+Y+ I++ SN   +   A +      L  L   MSC +   R++ Q+ L  I  +   H
Sbjct: 839  PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895

Query: 360  EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 449
            +  F     T  TL    S  +  +L LST
Sbjct: 896  QPLF-----TIITLVLPSSTFITLVLPLST 920


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 60  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 155
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 72  QYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIE 251
           Q FK + + F+ +     D    K L  + K KY T +YR+   +  +  T +    R  
Sbjct: 14  QSFKEWTLCFEAKEMYLEDQ--NKALSGKSKYKYPTKRYRVKENIFTRPFTLKQPEVRCS 71

Query: 252 GTILCA 269
           G I+C+
Sbjct: 72  GRIMCS 77


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 45   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 131
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,022,026
Number of Sequences: 59808
Number of extensions: 519381
Number of successful extensions: 1310
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)