Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00369
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 108 5e-24
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 107 6e-24
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.12
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 6.1
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 6.1
At5g44010.1 68418.m05386 expressed protein 28 8.1
At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ... 28 8.1
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 108 bits (259), Expect = 5e-24
Identities = 46/86 (53%), Positives = 67/86 (77%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDE 687
+RVFGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+
Sbjct: 156 NRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEP 215
Query: 688 DSFKRQFSKYIKLGVTADAIEAIYKK 765
+ + FS YIK GV A++IE +YKK
Sbjct: 216 EKLQTHFSAYIKKGVEAESIEELYKK 241
Score = 105 bits (253), Expect = 3e-23
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 222 TCQVAYSRIEGTILCA 269
Q+ + I G I+ A
Sbjct: 61 VAQIVSASIAGDIVKA 76
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/83 (43%), Positives = 45/83 (54%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
+ +AY+HELP+YG+ VGLTNYAAAY TG +++VE
Sbjct: 74 VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
P D+ FR LDVGL RTTTG
Sbjct: 134 PTDS-RRPFRALLDVGLIRTTTG 155
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 107 bits (258), Expect = 6e-24
Identities = 46/86 (53%), Positives = 67/86 (77%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDE 687
+RVFGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+
Sbjct: 156 NRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEP 215
Query: 688 DSFKRQFSKYIKLGVTADAIEAIYKK 765
+ + FS YIK GV A++IE +YKK
Sbjct: 216 EKLQTHFSAYIKKGVEAESIEEMYKK 241
Score = 105 bits (251), Expect = 4e-23
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 222 TCQVAYSRIEGTILCA 269
Q+ + I G I+ A
Sbjct: 61 VAQIVSASIAGDIVKA 76
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/83 (43%), Positives = 45/83 (54%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
+ +AY+HELP+YG+ VGLTNYAAAY TG +++VE
Sbjct: 74 VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
P D+ FR LDVGL RTTTG
Sbjct: 134 PTDS-RRPFRALLDVGLIRTTTG 155
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 789 DPHGWLHGLLVDGFNSICSDS*FYVLAELSLERILIILFKTSHVF 655
DP GWL+ +DGF S C L +E +L+IL T H+F
Sbjct: 651 DPVGWLYSPAIDGF-SKCYMITIMAAVGLPMETVLMILVITRHLF 694
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 60 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 233
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 60 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 233
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At5g44010.1 68418.m05386 expressed protein
Length = 357
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 505 WSRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFN 612
WS +FG G ++ L + HS RF D + + N
Sbjct: 302 WSPLFGLYFGGIEKQLKLDHSTTRFCSCDKDLNEHN 337
>At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein
(FLA10)
Length = 422
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = -2
Query: 362 FVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIFVGETHNQTIF 183
F L A L++L ++ S HN+ T + +Y +FN +L+ E +++T
Sbjct: 7 FTLFAFTLSLL--TVASTVSGHNI-TQILSDTPEYSSFN---NYLSQTKLADEINSRT-- 58
Query: 182 RCVIFVLVLNNEAFTSIIISFPFT 111
I VLVLNN A +S+ P +
Sbjct: 59 --TITVLVLNNGAMSSLAGKHPLS 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,803
Number of Sequences: 28952
Number of extensions: 352253
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -