Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00368
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.74 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.74 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 600 CVGCIFALLISKASWYAFCESSTTECL 520
           C  CI   + S   W  +C S+   C+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCI 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 600 CVGCIFALLISKASWYAFCESSTTECL 520
           C  CI   + S   W  +C S+   C+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCI 509


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/69 (21%), Positives = 37/69 (53%)
 Frame = +3

Query: 306 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 485
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 486 YRYLAEVAQ 512
           + Y +EV++
Sbjct: 500 FDY-SEVSK 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,274
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)