Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00367
(282 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32728| Best HMM Match : Astacin (HMM E-Value=0) 31 0.19
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_54| Best HMM Match : Actin (HMM E-Value=0) 26 4.1
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46) 26 4.1
SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5) 26 5.4
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077) 25 7.1
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_11783| Best HMM Match : C4 (HMM E-Value=1) 25 9.4
>SB_32728| Best HMM Match : Astacin (HMM E-Value=0)
Length = 321
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 76 TQIFGILTLADTDKDLGHADPAPTGMA*SASTV 174
+ IF LTL +TD DL H+D P G A A +
Sbjct: 22 SDIFDDLTLEETDLDLPHSDLPPEGFAGDAREI 54
>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 193 HCLHMFKPYLRIKPCLLEQDRHD 125
H LH P KPCLL+ D H+
Sbjct: 318 HGLHFGSPARARKPCLLDHDEHE 340
>SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 213 HEHTL*STVCICSNRTCGLSHACWSRI--GMTEILVRICEGE 94
H H ++ + SN T G + +CW+ + G+ + V++ E
Sbjct: 32 HRHVRKESLWVLSNLTAGPAESCWAVVHAGLVPVTVKMLASE 73
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 104 QIRTRISVMPILLQQAWLNPQVRFEHM 184
Q+R R P+LL +A LNP++ E M
Sbjct: 2138 QLRVRGEDFPVLLTEAPLNPKMNRERM 2164
>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 111 GQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 236
G+ +R +C + ++ G N+CR C + +D + +D
Sbjct: 59 GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 108 YGQGSRSC--RSCSNRHGLIRKYGLNICRQCFREYAHD 215
Y +GS C +SC + +YG N C C Y+ D
Sbjct: 144 YDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181
>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
Length = 335
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 93 SHPRRYGQGSRSCRSCSNRH--GLIRKYGLNICRQC 194
+ P R+ + SCR C +H G Y ICR+C
Sbjct: 275 ARPSRFDRNQNSCRFCGLQHDRGNCPAYNA-ICRRC 309
>SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)
Length = 279
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 120 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 233
++ C++C H L RK+G+ +Q E I K+L
Sbjct: 230 NKHCKNCRKIHELARKHGIFQIKQLINEQRIWISEKEL 267
>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
Length = 359
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 122 RSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPS-RCS 6
R+L +S + + C++ F L C LTS L T + CS
Sbjct: 241 RALDLSGNTAVNDDCLSLFSWLECDELTSLDLSTTAVTCS 280
>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 282 FFFLLKSKIFIPTPFSPAS*ILCHEHTL*--STVCICSNRTCG 160
FF + S+ FIP +S C E S VC+CS + CG
Sbjct: 10 FFSVCLSRGFIPEKYSG-----CQEKDFGHGSIVCVCSEQECG 47
>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
Length = 565
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 168 YGLNICRQCFREYAHDIGFKK 230
Y ++C+ CFR + HD +K
Sbjct: 440 YRQHLCKVCFRAWMHDARMEK 460
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,631,360
Number of Sequences: 59808
Number of extensions: 179159
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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