Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00367
(282 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 95 6e-21
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 95 6e-21
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 95 6e-21
At3g12210.2 68416.m01524 expressed protein 31 0.16
At3g12210.1 68416.m01523 expressed protein 31 0.16
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl... 27 1.5
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 26 3.4
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 25 5.9
At1g67025.1 68414.m07621 hypothetical protein 25 5.9
At3g21450.1 68416.m02706 protein kinase family protein contains ... 25 7.8
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 69 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 230
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 69 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 230
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 69 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 230
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 169 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 62
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 169 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 62
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
SAM:salicylic acid carboxyl methyltransferase (SAMT)
[GI:6002712][Clarkia breweri] and to SAM:benzoic acid
carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 385
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 93 SHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDI 218
SH + GQ SC L+ +G +I F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 26.2 bits (55), Expect = 3.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 189 VCICSNRTCGLSHAC 145
+CI +NRTCG++ C
Sbjct: 223 ICIFANRTCGVTDKC 237
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 101 SQIRTRISVMPILLQQAWLNPQVRFEHMQTVL 196
+++R PILL +A LNP+V E M ++
Sbjct: 95 NELRLEPEEHPILLTEAPLNPKVNREKMTQIM 126
>At1g67025.1 68414.m07621 hypothetical protein
Length = 221
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 123 RSCRSCSNRHGLIRKYGLNICRQC 194
+SCR CSN HG+ ++ QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205
>At3g21450.1 68416.m02706 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 270
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 119 ISVMPILLQQAWLNPQVRF 175
I MP+++++ W +PQ RF
Sbjct: 30 IKDMPVVIKREWCSPQPRF 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,933,550
Number of Sequences: 28952
Number of extensions: 113601
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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