Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00366
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    59   3e-10
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.2  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   2.8  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   6.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
 Frame = +1

Query: 157 AGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFLYQXXXXXXXXXXXAR--P*MMRF*RS 330
           A ++++KEWVPVTKLGRLV+ GKI  +E IYL+               R    +M+    
Sbjct: 26  AKRDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKV-VP 84

Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
              +T         +   IGD++GH+GLG+K
Sbjct: 85  VQKQTRAGQRTRFKAFVVIGDSDGHVGLGIK 115



 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
           K +   E  L SLPIKE++I+  F  P LNDEV+K++PVQ +      T FK F
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAF 100


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 158 AHDHGXDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 36
           +HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 721 SHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 186 SCXQTRPSCSRRKNRQTREHLLVSLPIKEF------EIIXXFXGPSLNDEVLKIMPVQNK 347
           +C + R + ++ K R    ++LV   + E       E++     P+++ E++K      K
Sbjct: 34  ACLERRATVTQSKARSAYPNILVYTNLDELLADVNIELVVVSLPPNVHSEIVKKALNAGK 93

Query: 348 HVLDSTPF 371
           HV+   PF
Sbjct: 94  HVVCEKPF 101


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 312 DEVLKIMPVQNKHVLDSTPFK---HFCHWRQQRSYWFG 416
           D++L ++   N+HVL S PF    +F    +   Y FG
Sbjct: 22  DKILDLLSKVNEHVLKSEPFTKTYYFARDAKNPDYIFG 59


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 337 YRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
           Y +  CW  H S    + DNN     GVK
Sbjct: 23  YCSLPCWKIHQSQCETVNDNNTTTFKGVK 51


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 364 VLSSTCLFCTGMIFRTSSF 308
           +++S CL C G +F  SS+
Sbjct: 449 IITSFCLICGGAMFMASSY 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,536
Number of Sequences: 5004
Number of extensions: 24334
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)