Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00366
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 60 7e-10
07_01_0756 + 5819367-5820038,5820847-5821005 56 2e-08
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 30 0.90
02_02_0613 - 12145489-12145590,12145698-12145761,12146180-12146721 28 2.7
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 28 2.7
12_01_0361 - 2743355-2744134 28 3.6
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475... 28 3.6
08_02_0541 + 18369702-18369800,18370934-18371055,18371370-183714... 27 6.3
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 27 6.3
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 27 8.3
01_05_0507 - 22800124-22800163,22800411-22800554,22801291-228018... 27 8.3
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 60.1 bits (139), Expect = 7e-10
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 163 KEDQKEWVPVTKLGRLVREGKIDKLESIYL--FLYQXXXXXXXXXXXARP*MMRF*RSCL 336
++++++WVPVTKLGRLV+EG+ K+E IYL + + +M+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKI-TPVQ 96
Query: 337 YRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GDNNGH+GLGVK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVK 125
Score = 35.9 bits (79), Expect = 0.014
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 240 EHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
E L SLP+KE +I+ P L DEV+KI PVQ + T FK F
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAF 110
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 163 KEDQKEWVPVTKLGRLVREGKIDKLESIYL--FLYQXXXXXXXXXXXARP*MMRF*RSCL 336
++++++WVPVTKLGRLV+E KI K+E IYL + + +M+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLVPGLKDEVMKI-TPVQ 99
Query: 337 YRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD +GH+GLGVK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVK 128
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLP+KE +I+ P L DEV+KI PVQ + T FK F
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAF 113
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 29.9 bits (64), Expect = 0.90
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 215 RTRRPSLVTGTHSFWSSLPAHDHGXDHDRVHEDRRG 108
R RRPS V G S +S P HG D + DR G
Sbjct: 132 RRRRPSDVGGGSSLFSVQPGARHGNGEDLLVNDRMG 167
>02_02_0613 - 12145489-12145590,12145698-12145761,12146180-12146721
Length = 235
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 216 RRKNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNKHVLDSTPFKHFCH-WR 392
R K + EHL VS P E+I F P + M +QN + T F C+ +
Sbjct: 140 RMKASEGYEHLKVSCPFVLKELIARFISPEMEAAREITMDLQNLKIWVET-FDSLCYNFE 198
Query: 393 QQRSYW 410
+ +W
Sbjct: 199 NYKKFW 204
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 209 RRPSLVTGTHSFWSSLPAHDHGXDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLL 30
RR L T T++ SS P H D D ++IR +NR L + PLL
Sbjct: 204 RRKLLRTPTNAVPSSTPPHTAYKDAPPAARDLATQTTSASVKIRGKNRLNQSLSRVEPLL 263
Query: 29 NDGL 18
+ GL
Sbjct: 264 DAGL 267
>12_01_0361 - 2743355-2744134
Length = 259
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 188 GTHSFWSSLPAHDHGXDHDRVHED 117
G + WS LP D DH R++ED
Sbjct: 101 GIDTSWSVLPYDDDDGDHKRMYED 124
>08_02_0423 -
16946435-16946542,16946924-16947045,16947442-16947504,
16949707-16949844,16950062-16950170,16950610-16950934,
16952482-16952645
Length = 342
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 161 PAHDHGXDHDRVHEDRRGLYL 99
PA D G D HE+R+GLY+
Sbjct: 191 PAEDGGWTVDAHHEERKGLYI 211
>08_02_0541 +
18369702-18369800,18370934-18371055,18371370-18371439,
18371530-18371679,18371776-18371911,18372000-18372096,
18372193-18372262
Length = 247
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 334 LYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
LY CWT +I+A D + +GVK
Sbjct: 129 LYTAGICWTLVYDTIYAHQDKEDDVKVGVK 158
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 156 GRQGRPERVGSCXQTRPSCSRRKNRQTREHLLVSLP-IKEFEIIXXFXG--PSLNDEVLK 326
G++ +RVGS + R R+K R+ +E + P ++E E + S ND +
Sbjct: 6 GKRAADDRVGSTMEQRFKSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIH 65
Query: 327 IMPVQNKHVL 356
+ + + L
Sbjct: 66 VTDLSGRETL 75
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 334 LYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
LY CWT +I+A D + +GVK
Sbjct: 300 LYTAGICWTLVYDTIYAHQDKEDDLKVGVK 329
>01_05_0507 -
22800124-22800163,22800411-22800554,22801291-22801850,
22803207-22803264,22803885-22804124,22804191-22804315
Length = 388
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 224 FPSRTRRPSLVTGTHSFWSSLPAHDHGXDHD 132
FPS R L+ +W HDHG D D
Sbjct: 311 FPSPDYRHILIGHLWVWWHPTSLHDHGRDSD 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,907
Number of Sequences: 37544
Number of extensions: 170220
Number of successful extensions: 539
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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