Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00366
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   5e-08
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.9  
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   27   8.6  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 31/52 (59%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
 Frame = +3

Query: 231 QTREHL-LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
           +T EH+ L SLPIKEFEII  F G +L DEVLKIMPVQ +      T FK F
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAF 75



 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +1

Query: 181 WVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLYRTNT 351
           WVPVTKLGRLV++ KI  LE IYLF   + +            +  +++       +T  
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKI-MPVQKQTRA 66

Query: 352 CWTAHLSSIFAIGDNNGHIGLGVK 423
                  +  AIGD+NGH+GLGVK
Sbjct: 67  GQRTRFKAFVAIGDSNGHVGLGVK 90


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 218 SRTRRPSLVTGTHSFWSSLPAHDHGXDHDRVHEDRRGLYLHRVIRIRRENRHV 60
           +RT   ++VT TH+      AH+H     R+H       +H  I + R + H+
Sbjct: 219 TRTHNHNMVTRTHNHNMVTRAHNHNM-VTRIHNHIMVTRIHNHIMVTRIHNHI 270


>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 424 TXHPNQYDRCCRQWQKCLKGVLSSTCLFC 338
           T +P  Y    +++++C+K +LSS C  C
Sbjct: 91  TVNPFVYTLQSQRFRRCVKDILSSVCCAC 119


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 358 TAHLSSIFAIGDNNGHIG 411
           TA   S+F  GD NGH+G
Sbjct: 173 TAETESLFLCGDFNGHVG 190


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 358 TAHLSSIFAIGDNNGHIG 411
           TA   S+F  GD NGH+G
Sbjct: 173 TAETESLFLCGDFNGHVG 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,080
Number of Sequences: 59808
Number of extensions: 193607
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)