Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00366
(425 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 75 4e-14
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 75 4e-14
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 75 4e-14
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 75 4e-14
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 75 4e-14
AY089340-1|AAL90078.1| 790|Drosophila melanogaster AT15733p pro... 29 3.4
AE013599-3474|AAM71125.1| 790|Drosophila melanogaster CG3622-PA... 29 3.4
AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB... 29 3.4
AE014134-1249|ABI31297.1| 260|Drosophila melanogaster CG13784-P... 28 6.0
BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p pro... 27 7.9
AY118627-1|AAM49996.1| 432|Drosophila melanogaster RE35233p pro... 27 7.9
AE014298-967|AAF46212.1| 432|Drosophila melanogaster CG3044-PA ... 27 7.9
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA... 27 7.9
AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA... 27 7.9
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +1
Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RS 330
GKED KEWVPVTKLGRLVREGKI LE IYL+ + + + +++
Sbjct: 36 GKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI-MP 94
Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + AIGDNNGHIGLGVK
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLPIKEFEII F G SL DEVLKIMPVQ + T FK F
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAF 110
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +1
Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RS 330
GKED KEWVPVTKLGRLVREGKI LE IYL+ + + + +++
Sbjct: 36 GKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI-MP 94
Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + AIGDNNGHIGLGVK
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLPIKEFEII F G SL DEVLKIMPVQ + T FK F
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAF 110
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +1
Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RS 330
GKED KEWVPVTKLGRLVREGKI LE IYL+ + + + +++
Sbjct: 36 GKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI-MP 94
Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + AIGDNNGHIGLGVK
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLPIKEFEII F G SL DEVLKIMPVQ + T FK F
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAF 110
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +1
Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RS 330
GKED KEWVPVTKLGRLVREGKI LE IYL+ + + + +++
Sbjct: 36 GKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI-MP 94
Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + AIGDNNGHIGLGVK
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLPIKEFEII F G SL DEVLKIMPVQ + T FK F
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAF 110
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +1
Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RS 330
GKED KEWVPVTKLGRLVREGKI LE IYL+ + + + +++
Sbjct: 36 GKEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI-MP 94
Query: 331 CLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + AIGDNNGHIGLGVK
Sbjct: 95 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
K + E L SLPIKEFEII F G SL DEVLKIMPVQ + T FK F
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAF 110
>AY089340-1|AAL90078.1| 790|Drosophila melanogaster AT15733p
protein.
Length = 790
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 253 TSKCSRVCRFFLREQDGRVWXQEPTLSGLPCRP 155
T +CR QDG W P L G C P
Sbjct: 238 TQSKMEICRDLHCRQDGLPWTSHPALEGTECGP 270
>AE013599-3474|AAM71125.1| 790|Drosophila melanogaster CG3622-PA,
isoform A protein.
Length = 790
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 253 TSKCSRVCRFFLREQDGRVWXQEPTLSGLPCRP 155
T +CR QDG W P L G C P
Sbjct: 238 TQSKMEICRDLHCRQDGLPWTSHPALEGTECGP 270
>AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB,
isoform B protein.
Length = 1091
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 253 TSKCSRVCRFFLREQDGRVWXQEPTLSGLPCRP 155
T +CR QDG W P L G C P
Sbjct: 539 TQSKMEICRDLHCRQDGLPWTSHPALEGTECGP 571
>AE014134-1249|ABI31297.1| 260|Drosophila melanogaster CG13784-PC,
isoform C protein.
Length = 260
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 216 RRKNRQTREHLLVSLPIKEFEIIXXFX-GPSLNDEV--LKIMPVQNKHVLDSTPFKHFCH 386
+R N REH L + +++ G S++ E + V+++H L+ FK+F +
Sbjct: 99 KRVNANNREHALRGDELHLPKVMTDTDTGASISTEAGGSVLKRVRSRHYLNDLDFKYFWN 158
Query: 387 WRQQRSY 407
W +SY
Sbjct: 159 WTDFQSY 165
>BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p
protein.
Length = 823
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 155 HDHGXDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 27
H D R+H ++GL + V+ + REN VH + ++ LLN
Sbjct: 364 HIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407
>AY118627-1|AAM49996.1| 432|Drosophila melanogaster RE35233p
protein.
Length = 432
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 325 RSCLYRTNTCWTAHLSSIFAIGDNNGHIGLGV 420
R+C RT CW+A L S+ + G IGLG+
Sbjct: 25 RNCSLRTLVCWSALLFSLLCL--CLGFIGLGL 54
>AE014298-967|AAF46212.1| 432|Drosophila melanogaster CG3044-PA
protein.
Length = 432
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 325 RSCLYRTNTCWTAHLSSIFAIGDNNGHIGLGV 420
R+C RT CW+A L S+ + G IGLG+
Sbjct: 25 RNCSLRTLVCWSALLFSLLCL--CLGFIGLGL 54
>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
protein.
Length = 1958
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 155 HDHGXDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 27
H D R+H ++GL + V+ + REN VH + ++ LLN
Sbjct: 330 HIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373
>AE014297-756|AAF54239.3| 1052|Drosophila melanogaster CG31462-PA
protein.
Length = 1052
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 159 RQGRPERVGSCXQTRPSCSRRKNRQTREHLLVSLPIKEFE 278
R RP+R G + +R +N + H L +P++ FE
Sbjct: 181 RSSRPQRQGRGLRRLFESNRSQNPPSEHHYLHGVPVRRFE 220
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,225
Number of Sequences: 53049
Number of extensions: 287371
Number of successful extensions: 2037
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -