Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00366
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    53   7e-08
AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical ...    30   0.80 
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     28   3.2  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF003140-7|AAB54170.2|  333|Caenorhabditis elegans Hypothetical ...    26   9.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +1

Query: 160 GKEDQKEWVPVTKLGRLVREGKIDKLESIYL--FLYQXXXXXXXXXXXARP*MMRF*RSC 333
           G E + EW PVTKLGRLV+E KI  LE IYL     +            +  +++     
Sbjct: 50  GGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKI-SPV 108

Query: 334 LYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
             +T         +  AIGD+ GH+GLGVK
Sbjct: 109 QKQTTAGQRTRFKAFVAIGDHAGHVGLGVK 138



 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 32/77 (41%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 156 GRQGRPERVGSCXQTRPSCSRRKNRQTREHL-LVSLPIKEFEIIXXFXGPSLNDEVLKIM 332
           GR G  E   +         + K   T E + L SLPIKEFEII      +L DEVLKI 
Sbjct: 48  GRGGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCS-NLKDEVLKIS 106

Query: 333 PVQNKHVL-DSTPFKHF 380
           PVQ +      T FK F
Sbjct: 107 PVQKQTTAGQRTRFKAF 123


>AC006723-2|AAF59428.1|  114|Caenorhabditis elegans Hypothetical
           protein Y19D10B.3 protein.
          Length = 114

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -2

Query: 382 QKCLKGVLSSTCLFCTGMIFRTSSFRDGPXXKXMISNS---LIGKETSKCSRVCRFFLRE 212
           +KCL  +L + C FC  +    S     P       N+    IG   ++CS VC F    
Sbjct: 3   EKCLVFLLCAVCAFCVNLTVFFSKKNCDPKCTFENQNATSKTIGSFPTECSTVCSFLRIT 62

Query: 211 QD 206
           +D
Sbjct: 63  ED 64


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 158  PARKTRKSGFLXPNSAVLFAKEKSTNSRAFTCFFTNQ 268
            P+++TR S  L    A L AKEK+ + RAF   F +Q
Sbjct: 1029 PSKETRWSPILP--LAPLIAKEKANDKRAFFLIFNSQ 1063


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 158  PARKTRKSGFLXPNSAVLFAKEKSTNSRAFTCFFTNQ 268
            P+++TR S  L    A L AKEK+ + RAF   F +Q
Sbjct: 1029 PSKETRWSPILP--LAPLIAKEKANDKRAFFLIFNSQ 1063


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 158  PARKTRKSGFLXPNSAVLFAKEKSTNSRAFTCFFTNQ 268
            P+++TR S  L    A L AKEK+ + RAF   F +Q
Sbjct: 982  PSKETRWSPILP--LAPLIAKEKANDKRAFFLIFNSQ 1016


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 173 WSSLPAHDHGXDHDR-VHEDRRGLYLHRVIRIRRENRHVHRLEQRP 39
           WS LP  D   + ++ V  ++   Y HR+  ++  N++ + L +RP
Sbjct: 338 WSGLPYSDCTWEDEKMVAPEQIKAYYHRIENLKSPNKNSNVLRKRP 383


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 CXQTRPSCSRRKNRQTREHLLVSL 260
           C Q +P+C+   N Q  E +LVS+
Sbjct: 180 CPQNQPACTCSTNNQQNEQILVSI 203


>AF003140-7|AAB54170.2|  333|Caenorhabditis elegans Hypothetical
           protein C44E4.2 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 24  IVQQWRTLLQPVDVAVFAANSDHAVEIE 107
           I  QWR +++ +D++ F++ S + V ++
Sbjct: 84  IEPQWRIMMESIDISKFSSTSSNFVHMD 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,537,627
Number of Sequences: 27780
Number of extensions: 141126
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)