Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00366
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   3.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   4.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   4.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   4.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   4.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   4.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   4.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEII 284
           KN QTREH L++  +   ++I
Sbjct: 129 KNGQTREHALLAFTLGVKQLI 149


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEII 284
           KN QTREH L++  +   ++I
Sbjct: 56  KNGQTREHALLAFTLGVKQLI 76


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEII 284
           KN QTREH L++  +   ++I
Sbjct: 72  KNGQTREHALLAFTLGVKQLI 92


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEII 284
           KN QTREH L++  +   ++I
Sbjct: 129 KNGQTREHALLAFTLGVKQLI 149


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 207 SCSRRKNRQTRE 242
           SCSR +NR+ RE
Sbjct: 236 SCSRDRNREYRE 247


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = -1

Query: 386 MAKMLERCAVQHVFVLYRHDL*NLIIQGRAXEXXNDLEFFDW 261
           M K+  + +    F++Y HD     +Q  +     D   F W
Sbjct: 154 MVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQW 195


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 218 KEKSTNSRAFTCFFTNQRIRDHXFXXRPV 304
           KEK    R  +C    +R  +  F  RP+
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPI 29


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 125 HEDRRGLYLHRVIRIR 78
           HED+RG Y   +  IR
Sbjct: 495 HEDKRGCYQLAINHIR 510


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 125 HEDRRGLYLHRVIRIR 78
           HED+RG Y   +  IR
Sbjct: 585 HEDKRGCYQLAINHIR 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,180
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 48
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)