Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00366
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 60 6e-10
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 54 4e-08
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 54 4e-08
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 54 4e-08
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 54 4e-08
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 51 3e-07
At3g23110.1 68416.m02913 disease resistance family protein conta... 29 1.7
At1g61170.1 68414.m06893 expressed protein 28 2.3
At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s... 27 4.0
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s... 27 4.0
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 4.0
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 7.0
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 26 9.3
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 26 9.3
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 26 9.3
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 26 9.3
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 26 9.3
At1g18090.2 68414.m02241 exonuclease, putative similar to Swiss-... 26 9.3
At1g18090.1 68414.m02240 exonuclease, putative similar to Swiss-... 26 9.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 60.1 bits (139), Expect = 6e-10
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Frame = +1
Query: 157 AGKEDQKE-WVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF* 324
AG+ ++E WVPVTKLGRLV+EGKI K+E IYL + + + +M+
Sbjct: 36 AGRAPEEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKI- 94
Query: 325 RSCLYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD+NGH+GLGVK
Sbjct: 95 MPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVK 127
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 249 LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
L SLP+KE++II GPSL DEV+KIMPVQ + T FK F
Sbjct: 68 LHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAF 112
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLY 339
++ +WVPVTKLGRLV + KI KLE IYL + + + +M+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKI-MPVQK 107
Query: 340 RTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD NGH+GLGVK
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 249 LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
L SLP+KE++II GP+L DEV+KIMPVQ + T FK F
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLY 339
++ +WVPVTKLGRLV + KI KLE IYL + + + +M+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKI-MPVQK 107
Query: 340 RTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD NGH+GLGVK
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 249 LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
L SLP+KE++II GP+L DEV+KIMPVQ + T FK F
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLY 339
++ +WVPVTKLGRLV + KI KLE IYL + + + +M+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKI-MPVQK 107
Query: 340 RTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD NGH+GLGVK
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 249 LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
L SLP+KE++II GP+L DEV+KIMPVQ + T FK F
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 54.0 bits (124), Expect = 4e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLY 339
++ +WVPVTKLGRLV + KI KLE IYL + + + +M+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKI-MPVQK 107
Query: 340 RTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD NGH+GLGVK
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 249 LVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
L SLP+KE++II GP+L DEV+KIMPVQ + T FK F
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 51.2 bits (117), Expect = 3e-07
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYLF---LYQXXXXXXXXXXXARP*MMRF*RSCLY 339
++++WVPVTKLGRLV G I ++E IYL + + + +M+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKI-MPVQK 108
Query: 340 RTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
+T + +GD NGH+GLGVK
Sbjct: 109 QTRAGQRTRFKAFVVVGDGNGHVGLGVK 136
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 228 RQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNK-HVLDSTPFKHF 380
+Q + L SLP+KE++II GP+L DEV+KIMPVQ + T FK F
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 121
>At3g23110.1 68416.m02913 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 835
Score = 28.7 bits (61), Expect = 1.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 321 LKIMPVQNKHVLDSTPFKHFCHWRQQRSYW 410
++IM + N + + S P +F +W + S W
Sbjct: 573 MRIMDISNNNFVGSLPQDYFANWTEMSSVW 602
>At1g61170.1 68414.m06893 expressed protein
Length = 251
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 373 LKGVLSSTCLFCTGMIFRTSSFRD 302
+K VLS T LF FRTS+F+D
Sbjct: 32 VKEVLSETTLFTPSSSFRTSTFKD 55
>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 334 LYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
LY + CWT +I+A D + +GVK
Sbjct: 289 LYLSGVCWTLVYDTIYAHQDKEDDVKVGVK 318
>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 334 LYRTNTCWTAHLSSIFAIGDNNGHIGLGVK 423
LY + CWT +I+A D + +GVK
Sbjct: 289 LYLSGVCWTLVYDTIYAHQDKEDDVKVGVK 318
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 12 LSEPIVQQWRTLLQP 56
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 352 CWTAHLSSIFAIGDNNGHIGL 414
C T+ S +FA+ D +GH+ L
Sbjct: 78 CKTSRNSQLFAVSDEDGHVSL 98
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 307 RDGPXXKXMISNSLIGKETSKCSRVCRFFLREQDGR 200
R+ P + ++ +L+ T KC C RE+ GR
Sbjct: 288 RNCPHLETLVLEALLHHVTDKCGDACACVSREEKGR 323
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +3
Query: 321 LKIMPVQNKHVLDSTPFKHFCHWRQQRSYWFGCXV 425
++I+ + N + + S P +F +W + W G +
Sbjct: 361 IRIIDISNNNFVGSLPQDYFANWLEMSLVWSGSDI 395
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 215 AKEKSTNSRAFTCFFTNQRIRD 280
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 215 AKEKSTNSRAFTCFFTNQRIRD 280
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 215 AKEKSTNSRAFTCFFTNQRIRD 280
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
>At1g18090.2 68414.m02241 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNKHVLDSTPFKHF 380
K+ + H L++LP+++ E F GP L+ V + N + F HF
Sbjct: 302 KHLKPLSHNLLNLPVEQLE----FLGPDLSPSVAVAIAEGNVDPITMKAFNHF 350
>At1g18090.1 68414.m02240 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 577
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIXXFXGPSLNDEVLKIMPVQNKHVLDSTPFKHF 380
K+ + H L++LP+++ E F GP L+ V + N + F HF
Sbjct: 302 KHLKPLSHNLLNLPVEQLE----FLGPDLSPSVAVAIAEGNVDPITMKAFNHF 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,089,271
Number of Sequences: 28952
Number of extensions: 132959
Number of successful extensions: 423
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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