Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00364
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 167 1e-42
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 99 7e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 4e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 90 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 2e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 3e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.090
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 3.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 4.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 5.9
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 26 5.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 7.9
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 7.9
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 167 bits (406), Expect = 1e-42
Identities = 76/82 (92%), Positives = 78/82 (95%)
Frame = +2
Query: 11 GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 190
GIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA Y
Sbjct: 74 GIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFY 133
Query: 191 VAIQAVLSLYASGRTTGIVLDS 256
VAIQAVLSLYASGRTTGIVLDS
Sbjct: 134 VAIQAVLSLYASGRTTGIVLDS 155
Score = 150 bits (363), Expect = 2e-37
Identities = 69/76 (90%), Positives = 74/76 (97%)
Frame = +1
Query: 256 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 435
GDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEK
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEK 215
Query: 436 LCYVALDFEQEMATAA 483
LCYVALDFEQE+ TAA
Sbjct: 216 LCYVALDFEQELQTAA 231
Score = 90.2 bits (214), Expect = 2e-19
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 507 FELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHENTYNSIMKCERGHP*DLYATRIV 686
+ELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKC+ DLY ++
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 98.7 bits (235), Expect = 7e-22
Identities = 41/83 (49%), Positives = 63/83 (75%)
Frame = +2
Query: 8 SGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 187
+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +
Sbjct: 73 NGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGV 132
Query: 188 YVAIQAVLSLYASGRTTGIVLDS 256
YVAIQAVLSLYA G ++G+V+DS
Sbjct: 133 YVAIQAVLSLYAQGLSSGVVVDS 155
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/69 (56%), Positives = 51/69 (73%)
Frame = +1
Query: 256 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 435
GDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEK
Sbjct: 156 GDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEK 215
Query: 436 LCYVALDFE 462
LCYV+ D E
Sbjct: 216 LCYVSYDLE 224
Score = 53.6 bits (123), Expect = 3e-08
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 507 FELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHENTYNSIMKCE 647
+ LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I +
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAAD 286
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 4e-21
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 GIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 187
GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+
Sbjct: 78 GIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPAL 137
Query: 188 YVAIQAVLSLYASGRTTGIVLD 253
++Q VL+LYAS RTTGIVL+
Sbjct: 138 SFSLQPVLALYASARTTGIVLE 159
Score = 93.1 bits (221), Expect = 3e-20
Identities = 53/148 (35%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Frame = +1
Query: 256 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 435
GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK
Sbjct: 161 GDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEK 220
Query: 436 LCYVALDFEQEMATAAXXXXXXXXXNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAAST 615
CYVA DF E+ + P ++ T+ A + NP + A+
Sbjct: 221 CCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNP-EMMGSEASGL 279
Query: 616 RTHITPS-*SANVDIRKTCTQH-VLSGG 693
+ S +++D+R T + VLSGG
Sbjct: 280 HIQLFKSILLSDIDLRSTLYSNIVLSGG 307
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 89.8 bits (213), Expect = 3e-19
Identities = 40/84 (47%), Positives = 54/84 (64%)
Frame = +2
Query: 11 GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 190
G + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y
Sbjct: 97 GQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLY 156
Query: 191 VAIQAVLSLYASGRTTGIVLDSAT 262
+A+QAVL+L AS ++ + S T
Sbjct: 157 IAVQAVLALAASWTSSKVTDRSLT 180
Score = 57.2 bits (132), Expect = 2e-09
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 256 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIK 429
GDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER IK
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IK 241
Query: 430 EKLCYVALDFEQEMA 474
E+ CYV D +E +
Sbjct: 242 EECCYVCPDIVKEFS 256
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +2
Query: 8 SGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 187
+G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ PA
Sbjct: 71 NGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPAT 130
Query: 188 YVAIQAVLSLYASGRTTGIVLD 253
Y+A Q + +ASG+ T ++D
Sbjct: 131 YLAKQETCAAFASGKGTACLVD 152
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 507 FELPDGQVITIGNERFRCPEALFQP 581
FE PDG + G ER++ PE LF P
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +2
Query: 5 TSGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 184
++GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 73 SNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPA 132
Query: 185 MYVAIQAVLSLYASGRTTGIVLD--SATVSPTP 277
Y+ QAV +A+ ++T +++D S S TP
Sbjct: 133 FYLTKQAVCVAFANSKSTALIVDIGSDNASVTP 165
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 507 FELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHENTYNSIMKCE 647
FE PDG G ERFR E LF PSF + G+HE Y SI+ C+
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACD 336
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 1e-10
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +2
Query: 14 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 193
+++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P++
Sbjct: 91 VISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAY 149
Query: 194 AIQAVLSLYASGR--TTGIVLD 253
I + S Y + + ++GIVL+
Sbjct: 150 GIDGLFSFYHNTKPSSSGIVLN 171
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +1
Query: 253 LGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 432
LG+ SH +P+ G + R+ G + YL+K+ + SF +
Sbjct: 172 LGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMH 231
Query: 433 KLCYVALDFEQEMATA 480
C+V+ D+ ++A A
Sbjct: 232 DHCHVSSDYTHDIAHA 247
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 546 ERFRCPEALFQPSFLGMEACGIHE 617
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/72 (33%), Positives = 45/72 (62%)
Frame = +1
Query: 256 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 435
G +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 164 GYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKES 221
Query: 436 LCYVALDFEQEM 471
+CYV+ +F+++M
Sbjct: 222 VCYVSQNFKEDM 233
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 498 REVFELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHENTYNSI 635
R++ + + QV+ + NERF PE LF PS + + GI E S+
Sbjct: 263 RDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 GIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNT 178
G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 117 GRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQV 175
Query: 179 PAMYVAIQAVLSLYASGRTTGIVLD 253
P +A + ++ LYA G G+V+D
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVID 200
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.090
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 59 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 202
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 177 RPPCTSPSKPCSRCTRPVVPPVSCWTRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLP 356
+PP S S+ S P PP LP + R TPP L S P LP
Sbjct: 375 QPPPLSSSRAVSN--PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 357 HEDP 368
P
Sbjct: 433 PSAP 436
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 195 PSKPCSRCTRPVVPPVSCWTRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 344
P P R P PP S + R P + R + PP P + RS P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +3
Query: 471 GH-RCIQQLPREVFELPDGQV---ITIGN-ERFRCPEALFQPSFLGMEACGIHENTYNSI 635
GH + + P E E+ D + ITIGN + FQ C I E NS+
Sbjct: 16 GHIKLFNKFPFEGVEVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 636 MKCERGHP*DLYATRIVR 689
M R + L ATRIV+
Sbjct: 76 MMNGRNNGKKLLATRIVK 93
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 596 HTQERGLEESLWATESFVSDSDDLTVGKFEDFSRELL 486
H +RG+ + + + VS S DLT+ FE S +LL
Sbjct: 386 HAHQRGIACAQYNGKFIVSGSSDLTIRIFEASSGKLL 422
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 101 LLTEAPLNPKANREKMTQIMFETFN 175
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 418 RDIKEKLCYVALDFEQEMATAAXXXXXXXXXNFPTVRSSLSETKDSVAQRLSSNPRSW 591
R+I++K L EQEM + P R + +DS A++L+S SW
Sbjct: 429 REIRQK--EAKLKSEQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQLTSETPSW 484
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 137 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPCPSTKDTHSPTP 313
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAP 182
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 501 EVFELPDGQVITIGN-ERFRCPEALFQPSFLGMEACGIHENTYNSIMKCERGHP*DLYAT 677
EV ++ ITIGN + FQ C I E NS+M R + L AT
Sbjct: 30 EVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLAT 89
Query: 678 RIVR 689
RIV+
Sbjct: 90 RIVK 93
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 207 CSRCTRPVVPPVSCWTRRRCLPHRAHLRRIR 299
CS CT + P S W+ C H HL IR
Sbjct: 197 CSVCTDTINPSTSIWSCGTCY-HVFHLSCIR 226
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +1
Query: 283 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 390
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 260 SPSPARYRWYDRTRTAR 210
SP+P +Y YDR R +R
Sbjct: 184 SPTPGKYMGYDRRRNSR 200
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 207 CSRCTRPVVPPVSCWTRRRCL 269
C RP++ + W +RRCL
Sbjct: 185 CDPRVRPLIVMIKYWAKRRCL 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,542
Number of Sequences: 5004
Number of extensions: 66944
Number of successful extensions: 270
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -