Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00364
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             107   1e-25
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.90 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   4.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   4.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  107 bits (257), Expect = 1e-25
 Identities = 48/60 (80%), Positives = 52/60 (86%)
 Frame = +3

Query: 507 FELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHENTYNSIMKCERGHP*DLYATRIV 686
           +ELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE TYNSIMKC+     DLYA  ++
Sbjct: 15  YELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 74


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 655 CPRSHFMMELYVFSWMPQASIPKNEGWKRASGQRNLSFPIVMT 527
           CP    + +L     + Q  IP +      +G+RN+  PIV +
Sbjct: 150 CPSQIVVFDLKNSKLLKQVKIPHDIAINSTTGKRNVVTPIVQS 192


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 71   LRVAPEEHPVLLTEAPLNPKANREKM 148
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 300 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 398
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 218 YASGRTTGIV-LDSATVSPTPCPSTKDTHSPTPSCV 322
           +  G T  +  L+S T   TP   T+D H     CV
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCV 100


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 218 YASGRTTGIV-LDSATVSPTPCPSTKDTHSPTPSCV 322
           +  G T  +  L+S T   TP   T+D H     CV
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,766
Number of Sequences: 438
Number of extensions: 4994
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)