Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00363
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       26   0.24 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.72 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   5.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.7  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   8.9  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   HEVHQTAIARNNPRKAVRS 60
           H +HQT I  NNPR   R+
Sbjct: 44  HPIHQTVIYHNNPRDPNRA 62


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 597  SRPWLSLVVVSIVVPTGLLLLGLAPCCWFEL*L-RHLHPGHFGAEPDF-VLPAPPGNCAD 424
            S  W+  V  ++ +    +LL L P CW+ L +  H + G   AE +F  L    G  A 
Sbjct: 1533 STEWIQ-VSNNVKLGQNFVLLDLDPACWYHLRVTAHNNAGFNVAEYEFATLTVTGGTIAP 1591

Query: 423  A 421
            A
Sbjct: 1592 A 1592


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 489 HPGHFGAEPDFVLPAPPGNCAD 424
           HP H  + P  V P P     D
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPD 260


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 489 HPGHFGAEPDFVLPAPPGNCAD 424
           HP H  + P  V P P     D
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPD 152


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 416 PSASAQFPGGAGRTKSG 466
           PSAS  FPGG    + G
Sbjct: 11  PSASEAFPGGRTLVEKG 27


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 387 DLPHGVHXENCD 352
           D+ HGVH E C+
Sbjct: 212 DIVHGVHNELCN 223


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 332 WYNASFLTLISLCTPLVGRGST 267
           WY  +  T I LC  +   G T
Sbjct: 267 WYTVNASTNIFLCDEICNEGQT 288


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 332 WYNASFLTLISLCTPLVGRGST 267
           WY  +  T I LC  +   G T
Sbjct: 267 WYTVNASTNIFLCDEICNEGQT 288


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 SSWCYWSRW*ASKRLTLCCRQAPWLPP 197
           S+WC +S + ++ R  +  +  P+L P
Sbjct: 145 STWCNYSAYSSASRHHVDHQPVPYLTP 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,601
Number of Sequences: 336
Number of extensions: 2544
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)