Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00363
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 38 0.007
08_01_0202 - 1638978-1639571 36 0.028
07_01_0518 - 3857348-3857371,3857591-3857752 31 0.81
01_06_0456 + 29521282-29522064 29 2.5
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 29 3.3
03_01_0056 - 471338-471919,472013-472213 29 4.3
11_06_0416 + 23307984-23308281,23310083-23310900 28 5.7
04_04_1582 - 34590698-34591199,34593849-34594690 28 5.7
12_02_1224 + 27158810-27161366,27161593-27161969 28 7.5
03_05_0920 - 28812796-28813325,28814019-28816377 28 7.5
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 27 9.9
03_01_0483 + 3689155-3689814 27 9.9
>02_01_0158 - 1103461-1104186
Length = 241
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKG-FEAAGVTGPGGEPVKG 159
VHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 34 VHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
>08_01_0202 - 1638978-1639571
Length = 197
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYAADKX 183
VHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 33 VHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSGGGD 88
Query: 184 RGY 192
RGY
Sbjct: 89 RGY 91
>07_01_0518 - 3857348-3857371,3857591-3857752
Length = 61
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 413 PPSASAQFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGAKPKSNKPV 553
PP AQ GG + P WR LS S +Q+ + K+N PV
Sbjct: 14 PPLLRAQVDGGVAMVDDDDSVARPWWRQLSTRSEKQRWRR-KANSPV 59
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 488 WRCLSYNSNQQQGAKPKSNKPVGTTIETTTNESQGLDIQRP 610
WRC S S + G++ + +P GTT + + LD RP
Sbjct: 13 WRCYSPASGARGGSRRRRRRPAGTT-SRRCSRADRLDTLRP 52
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 70 GEXVEFAVVAGEKGFEAAGVTGPGGEPVKG 159
GE E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 440 LEIARTHSAEPSSIHWARTSPTASTAKI-ATEKTALRW 330
L+IA +A P+S SP+ +T ++ A +K A+RW
Sbjct: 199 LKIAGCEAAAPASCQPVPASPSGATGELSAQQKAAMRW 236
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 220 HLDEGNIGGGSHGACLQHKVSLLLAHH 140
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 64 GDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXR 186
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 461 SGSAP---KWPGWRCLSYNSNQQQGAKPKSNKPVGTTIETTTNESQGLDIQRP 610
SG+ P + P R L ++N GA P S V T NE+ G DI P
Sbjct: 142 SGAVPDLSRMPALRVLDVSNNYFSGAFPTSIANVTTLEVANFNENPGFDIWWP 194
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 492 LHPGHFGAEPDFV-LPAPPGNCADALGGTLLYSLGQDLPHGVH 367
+HP H G++PD V + GN + YS P +H
Sbjct: 544 VHPRHSGSDPDMVKITVAGGNVNGGAAASETYSQASSGPRDIH 586
>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 247 VELLHRLVRHLDEGNIGGGSHGACLQHKVSLLL 149
++L+ RLVR L GG + A ++HK++L++
Sbjct: 951 IKLVDRLVRVLSPEGSGGSTRYAGMRHKLTLVI 983
>03_01_0483 + 3689155-3689814
Length = 219
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 64 GDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,919
Number of Sequences: 37544
Number of extensions: 340107
Number of successful extensions: 1244
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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