Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00363
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +1

Query: 106 KGFEAAGVTGPGGEPVKGSPYAADKXRGYHR 198
           +G EA+ VTGP GEPV+GS YA D+ R  +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 344 FFPSQFSXWTPWGRSW 391
           +FPS F+ W+PW  +W
Sbjct: 3   WFPSSFNSWSPWTWNW 18


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 147 ASKRLTLCCRQAPWLPP 197
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 28  ARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGG-EPVKGSPYAADKXRG 189
           AR    +AVR    GE    +V  G  G    G  G GG E V+G+PY  ++  G
Sbjct: 395 AREYLARAVREGLRGEEGSPSVFLGGGGRGGGGGDGGGGGEGVQGTPYTPEEEEG 449


>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -3

Query: 443 RLEIARTHSAEPSSIHWARTSPTASTAKIATEKTALRWYNASFLTLI 303
           RL++A   SAE +S H A+T PTA   KI+     + W +   LTLI
Sbjct: 260 RLQVAA--SAETAS-H-AQTPPTAGIMKISFHLNLVVWRDLKMLTLI 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,333
Number of Sequences: 59808
Number of extensions: 327747
Number of successful extensions: 1043
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)