Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00363
(658 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 97 6e-20
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 97 6e-20
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 97 6e-20
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 97 6e-20
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 97 6e-20
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 97 6e-20
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 97 6e-20
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 97 6e-20
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 96 8e-20
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 96 1e-19
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 96 1e-19
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 96 1e-19
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 96 1e-19
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 96 1e-19
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 96 1e-19
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 96 1e-19
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 96 1e-19
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 96 1e-19
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 95 3e-19
BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2... 92 1e-18
BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2... 92 1e-18
AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-bo... 92 1e-18
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 91 3e-18
AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-bo... 88 3e-17
Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C. eleg... 42 0.003
DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein. 42 0.003
BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for IM... 42 0.003
BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for IM... 42 0.003
BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein. 42 0.003
BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein. 42 0.003
BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein. 42 0.003
AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C. el... 42 0.003
AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens ... 42 0.003
BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein. 36 0.17
AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C. ele... 36 0.17
AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens ... 36 0.17
AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN... 36 0.17
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 30 6.3
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 30 6.3
U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein prot... 30 6.3
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 30 6.3
BC117182-1|AAI17183.1| 1654|Homo sapiens CEP152 protein protein. 30 6.3
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 30 6.3
BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein. 30 6.3
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 30 6.3
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 30 6.3
AB209366-1|BAD92603.1| 493|Homo sapiens far upstream element-bi... 30 6.3
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 85 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 142
Query: 190 YHRQY 204
++R+Y
Sbjct: 143 HYRRY 147
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 83 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 140
Query: 190 YHRQY 204
++R+Y
Sbjct: 141 HYRRY 145
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 126 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 183
Query: 190 YHRQY 204
++R+Y
Sbjct: 184 HYRRY 188
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 96.7 bits (230), Expect = 6e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 96.3 bits (229), Expect = 8e-20
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD R
Sbjct: 86 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGEEAANVTGPGGVPVQGSKYAAD--RN 143
Query: 190 YHRQY 204
++R+Y
Sbjct: 144 HYRRY 148
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 188 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 246
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 247 YRRGYY 252
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 95.9 bits (228), Expect = 1e-19
Identities = 47/66 (71%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 51 VHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 109
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 110 YRRGYY 115
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 94.7 bits (225), Expect = 3e-19
Identities = 46/66 (69%), Positives = 52/66 (78%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI +NNPRK +RS+GDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+ R
Sbjct: 118 VHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRR- 176
Query: 190 YHRQYF 207
Y R Y+
Sbjct: 177 YRRGYY 182
>BC047760-1|AAH47760.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 190 YHRQYFP 210
R++ P
Sbjct: 181 --RRFIP 185
>BC033800-1|AAH33800.1| 364|Homo sapiens Y box binding protein 2
protein.
Length = 364
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 190 YHRQYFP 210
R++ P
Sbjct: 181 --RRFIP 185
>AF096834-1|AAD30662.1| 364|Homo sapiens germ cell specific Y-box
binding protein protein.
Length = 364
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 190 YHRQYFP 210
R++ P
Sbjct: 181 --RRFIP 185
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 91.1 bits (216), Expect = 3e-18
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
VH TA +NNPRK +RSVGDGE VEF VV GEKG +AA VTGPGG PV+GS YAAD R
Sbjct: 82 VHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGEKGAKAANVTGPGGVPVQGSKYAAD--RN 139
Query: 190 YHRQY 204
++R+Y
Sbjct: 140 HYRRY 144
>AB208818-1|BAD92055.1| 268|Homo sapiens germ cell specific Y-box
binding protein variant protein.
Length = 268
Score = 87.8 bits (208), Expect = 3e-17
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +1
Query: 13 HQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKXRGY 192
+QTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++ +
Sbjct: 26 NQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS- 84
Query: 193 HRQYFP 210
R++ P
Sbjct: 85 -RRFIP 89
>Z95329-1|CAI21661.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>DQ127228-1|AAZ38897.1| 250|Homo sapiens LIN28B protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>BC150538-1|AAI50539.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127315) protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC150537-1|AAI50538.1| 227|Homo sapiens Unknown (protein for
IMAGE:40127314) protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC141960-1|AAI41961.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC127713-1|AAI27714.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>BC127712-1|AAI27713.1| 227|Homo sapiens LIN28B protein protein.
Length = 227
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 52 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 87
>AL135911-2|CAI20969.2| 250|Homo sapiens lin-28 homolog B (C.
elegans) protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>AK131411-1|BAD18558.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ16517 fis, clone NT2RI3007167. ).
Length = 250
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGS 162
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>BC028566-1|AAH28566.1| 209|Homo sapiens LIN28 protein protein.
Length = 209
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGG 144
RS+ +GE VEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
>AL513365-12|CAI21500.1| 209|Homo sapiens lin-28 homolog (C.
elegans) protein.
Length = 209
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGG 144
RS+ +GE VEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
>AK022519-1|BAB14075.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ12457 fis, clone NT2RM1000666, weakly similar to
DNA-BINDING PROTEIN A. ).
Length = 209
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGG 144
RS+ +GE VEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
>AF521099-1|AAM77751.1| 209|Homo sapiens RNA-binding protein LIN-28
protein.
Length = 209
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 55 RSVGDGEXVEFAVVAGEKGFEAAGVTGPGG 144
RS+ +GE VEF KG E+ VTGPGG
Sbjct: 85 RSLKEGEAVEFTFKKSAKGLESIRVTGPGG 114
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein
protein.
Length = 644
Score = 30.3 bits (65), Expect = 6.3
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +2
Query: 377 WGRSWPNE*RRVPPSASAQFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGAKPKSNKPVG 556
WG ++P+ ++ PP + K+G+ P W Y QQ A+P P G
Sbjct: 510 WGNAYPHWQQQAPPDPA----------KAGTDPNSAAWAAY-YAHYYQQQAQPPPAAPAG 558
Query: 557 TTIETTTNESQGLDIQRP 610
T TN QG D Q P
Sbjct: 559 APTTTQTN-GQG-DQQNP 574
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 544 GERGFP--GLPGPSGEPGKQGPSGASGERG 571
>BC117182-1|AAI17183.1| 1654|Homo sapiens CEP152 protein protein.
Length = 1654
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 410 VPPSASAQFPGGAGRTKSGSAPKWP---GWRCLSY-NSNQQQGAKPKSNKPVGTTIETTT 577
+P SA+ F G G S P G +++ +SN++ G K P+ + +
Sbjct: 1434 LPHSAAYPFLGTLGNKPSPRCTPGPSESGCMHITFRDSNERLGLKVYKCNPLMESENAAS 1493
Query: 578 NESQGLDIQRP 610
+SQGLD+Q P
Sbjct: 1494 EKSQGLDVQEP 1504
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 968 GERGFP--GLPGPSGEPGKQGPSGASGERG 995
>BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein.
Length = 653
Score = 30.3 bits (65), Expect = 6.3
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +2
Query: 377 WGRSWPNE*RRVPPSASAQFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGAKPKSNKPVG 556
WG ++P+ ++ PP + K+G+ P W Y QQ A+P P G
Sbjct: 509 WGNAYPHWQQQAPPDPA----------KAGTDPNSAAWAAY-YAHYYQQQAQPPPAAPAG 557
Query: 557 TTIETTTNESQGLDIQRP 610
T TN QG D Q P
Sbjct: 558 APTTTQTN-GQG-DQQNP 573
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 965 GERGFP--GLPGPSGEPGKQGPSGASGERG 992
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 100 GEKGFEAAGVTGPGGEPVKGSPYAADKXRG 189
GE+GF G+ GP GEP K P A RG
Sbjct: 971 GERGFP--GLPGPSGEPGKQGPSGASGERG 998
>AB209366-1|BAD92603.1| 493|Homo sapiens far upstream
element-binding protein variant protein.
Length = 493
Score = 30.3 bits (65), Expect = 6.3
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +2
Query: 377 WGRSWPNE*RRVPPSASAQFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGAKPKSNKPVG 556
WG ++P+ ++ PP + K+G+ P W Y QQ A+P P G
Sbjct: 360 WGNAYPHWQQQAPPDPA----------KAGTDPNSAAWAAY-YAHYYQQQAQPPPAAPAG 408
Query: 557 TTIETTTNESQGLDIQRP 610
T TN QG D Q P
Sbjct: 409 APTTTQTN-GQG-DQQNP 424
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,284,358
Number of Sequences: 237096
Number of extensions: 1795773
Number of successful extensions: 6911
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 6491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6907
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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