Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00363
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 54 9e-08
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 54 9e-08
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 54 9e-08
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 51 8e-07
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 31 0.95
AC024808-4|AAK29924.1| 252|Caenorhabditis elegans Hypothetical ... 29 2.9
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 5.1
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 6.7
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 28 6.7
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +1
Query: 10 VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 180
VHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 48 VHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 VHQTAIARNNPRKA-VRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 171
VHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 119 VHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 VHQTAIARNNPRKA-VRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 168
VHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 93 VHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 VHQTAIARNNPRKA-VRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 171
VHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 119 VHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 VHQTAIARNNPRKA-VRSVGDGEXVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 168
VHQTAI++++ K +R++ D E V F +V G+ G EAA VTGP G V GS Y
Sbjct: 91 VHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 422 ASAQFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGAKPKSNKPVGTTIETTTNESQ 589
+S P G T S +AP+ P S ++ P ++KP +ETT ++
Sbjct: 1284 SSTSAPDGVSPTSSATAPEVPTTSASSTPDAVEESGIPSTSKPTAEPLETTAPSTE 1339
>AC024808-4|AAK29924.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AM.7 protein.
Length = 252
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 612 NGLWMSRPWLSLVVVSIVVPTGLLLLGLAPCC 517
N + +S PW ++I + TGLL++G A C
Sbjct: 39 NNVQLSNPWFISFSLTISLITGLLIMGTAEFC 70
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 406 EGSAECVRAISRRGREDKIRLSAKMARMEMPQLQLKPTAG 525
+G ++ +R R RE+K RL MA++ QLQ + TAG
Sbjct: 49 DGESDRLRQELAREREEKARLREDMAKLS--QLQQRKTAG 86
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 362 SXWTPWGRSWPNE*RRVPPSASA----QFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGA 529
S WT + + E ++VPPSA + F A + +P+ PG S + G
Sbjct: 51 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPG-NSGYLASGAESGP 109
Query: 530 KPKSNKPVGT-TIETTT 577
K ++KP T T E TT
Sbjct: 110 KKTTSKPATTPTPEPTT 126
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 362 SXWTPWGRSWPNE*RRVPPSASA----QFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGA 529
S WT + + E ++VPPSA + F A + +P+ PG S + G
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPG-NSGYLASGAESGP 68
Query: 530 KPKSNKPVGT-TIETTT 577
K ++KP T T E TT
Sbjct: 69 KKTTSKPATTPTPEPTT 85
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 362 SXWTPWGRSWPNE*RRVPPSASA----QFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGA 529
S WT + + E ++VPPSA + F A + +P+ PG S + G
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPG-NSGYLASGAESGP 68
Query: 530 KPKSNKPVGT-TIETTT 577
K ++KP T T E TT
Sbjct: 69 KKTTSKPATTPTPEPTT 85
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 362 SXWTPWGRSWPNE*RRVPPSASA----QFPGGAGRTKSGSAPKWPGWRCLSYNSNQQQGA 529
S WT + + E ++VPPSA + F A + +P+ PG S + G
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPG-NSGYLASGAESGP 68
Query: 530 KPKSNKPVGT-TIETTT 577
K ++KP T T E TT
Sbjct: 69 KKTTSKPATTPTPEPTT 85
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 332 WYNASFLTLISLCTPLVGRGST 267
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 332 WYNASFLTLISLCTPLVGRGST 267
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 332 WYNASFLTLISLCTPLVGRGST 267
W NASFLTL++ P++G+ T
Sbjct: 371 WQNASFLTLLNELEPVLGKTIT 392
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 482 PGWRCLSYNSNQQQGAKPKSNKPVGTTIETTTN 580
PG L+ ++Q Q A+P +N+ T + TTN
Sbjct: 73 PGAPHLNRRTSQNQAARPSTNQQTATQPQITTN 105
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 482 PGWRCLSYNSNQQQGAKPKSNKPVGTTIETTTN 580
PG L+ ++Q Q A+P +N+ T + TTN
Sbjct: 73 PGAPHLNRRTSQNQAARPSTNQQTATQPQITTN 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,289
Number of Sequences: 27780
Number of extensions: 241022
Number of successful extensions: 865
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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